miRNA display CGI


Results 61 - 80 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 118448 0.7 0.461534
Target:  5'- cGCgCG-GCUCgGCcugGccGCGGACGCGCAc -3'
miRNA:   3'- -CG-GCaCGAGgCG---CuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 123228 0.7 0.461534
Target:  5'- cGCCGgGUUCCGCGca-CGG-CGCGCGu -3'
miRNA:   3'- -CGGCaCGAGGCGCuacGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 112944 0.7 0.46967
Target:  5'- gGCCGcgacGCg-CGCGAUguuuuucaccgugGCGGACGCGCGc -3'
miRNA:   3'- -CGGCa---CGagGCGCUA-------------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 67281 0.7 0.470579
Target:  5'- cGCC-UGCgCCGCuGGUGcCGcGACGCGCGc -3'
miRNA:   3'- -CGGcACGaGGCG-CUAC-GC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 130924 0.7 0.478795
Target:  5'- gGCCGgGC-CCGCGGggGCGGGggcggcgggggguCGCGCGg -3'
miRNA:   3'- -CGGCaCGaGGCGCUa-CGCCU-------------GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 106516 0.7 0.48339
Target:  5'- cGCCGUGCcgggCGCGcuggccaccuucaccGUGCuGGCGCGCAu -3'
miRNA:   3'- -CGGCACGag--GCGC---------------UACGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 32955 0.7 0.488932
Target:  5'- uGCCGUGUUuuuuucCCGCGAcGgGGAgaGCGCGa -3'
miRNA:   3'- -CGGCACGA------GGCGCUaCgCCUg-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 31232 0.7 0.488932
Target:  5'- gGCCGgccgGC-CCgGCGAgcgaGCGGGCGgGCGa -3'
miRNA:   3'- -CGGCa---CGaGG-CGCUa---CGCCUGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 130266 0.7 0.488932
Target:  5'- gGCCGgcgcGCggCCcCGAggccGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa---CGa-GGcGCUa---CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 115173 0.7 0.493573
Target:  5'- aGCCGcgcggcagggggcGCUCCagccagcGCGccGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa------------CGAGG-------CGCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 99975 0.7 0.498234
Target:  5'- cGCCGcGCUCgugGCGgcGCuGGCGCGCGa -3'
miRNA:   3'- -CGGCaCGAGg--CGCuaCGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 71070 0.7 0.498234
Target:  5'- gGCCGUGgUCUucuaccaccacgGCGccGCGGGCGCGg- -3'
miRNA:   3'- -CGGCACgAGG------------CGCuaCGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 97813 0.69 0.506672
Target:  5'- gGCCGUGCgccggUCGCGGUaguuggucgucacGUGcGCGCGCAg -3'
miRNA:   3'- -CGGCACGa----GGCGCUA-------------CGCcUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 132092 0.69 0.507614
Target:  5'- cGCCGUcCUCCuCGAUGaGGccgGCGCGCAc -3'
miRNA:   3'- -CGGCAcGAGGcGCUACgCC---UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 92666 0.69 0.507614
Target:  5'- cGCCcUGCUgCCgGCGGccGgGGACGCGCGc -3'
miRNA:   3'- -CGGcACGA-GG-CGCUa-CgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 47751 0.69 0.507614
Target:  5'- aGCCG-GaCUUugCGCGAUGCGGcgauCGCGCc -3'
miRNA:   3'- -CGGCaC-GAG--GCGCUACGCCu---GCGCGu -5'
29429 5' -60.5 NC_006151.1 + 39862 0.69 0.516119
Target:  5'- cGCCGaGCUCCGCGGccccgagggccUGCcGGccgaguuGCGCGCc -3'
miRNA:   3'- -CGGCaCGAGGCGCU-----------ACG-CC-------UGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 54604 0.69 0.517068
Target:  5'- cGgCGUGgUCC-CGGUGCgccGGGCGCGCc -3'
miRNA:   3'- -CgGCACgAGGcGCUACG---CCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 104648 0.69 0.517068
Target:  5'- -aCGUGCgcgcggCCGcCGAcGCGGcGCGCGCGc -3'
miRNA:   3'- cgGCACGa-----GGC-GCUaCGCC-UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 124075 0.69 0.517068
Target:  5'- gGCCGUGCgcgcggCCGCGAccgaGCGgGAC-CGCu -3'
miRNA:   3'- -CGGCACGa-----GGCGCUa---CGC-CUGcGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.