miRNA display CGI


Results 81 - 100 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 97459 0.69 0.520869
Target:  5'- cGCCGaGCUcgggcaggcggcucaCCGCcacGUGGACGCGCAg -3'
miRNA:   3'- -CGGCaCGA---------------GGCGcuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 100877 0.69 0.522774
Target:  5'- cGCCGUGaaccuggaggugCUGCGccGCGGcGCGCGCGc -3'
miRNA:   3'- -CGGCACga----------GGCGCuaCGCC-UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 139643 0.69 0.526591
Target:  5'- cGCCG-GCgcgggggUCGCG--GCGGGCGCGCc -3'
miRNA:   3'- -CGGCaCGa------GGCGCuaCGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 133643 0.69 0.526591
Target:  5'- gGCgGUGgUCCG-GGUGCGaGAgGCGCu -3'
miRNA:   3'- -CGgCACgAGGCgCUACGC-CUgCGCGu -5'
29429 5' -60.5 NC_006151.1 + 84356 0.69 0.526591
Target:  5'- cGCCGgcccgcgGCggugaUCGCGAUcGCGG-CGCGCGg -3'
miRNA:   3'- -CGGCa------CGa----GGCGCUA-CGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 72266 0.69 0.526591
Target:  5'- cGCCGagcgGCguggCCagcauGCGGUGCGGcgucACGCGCGu -3'
miRNA:   3'- -CGGCa---CGa---GG-----CGCUACGCC----UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 106327 0.69 0.526591
Target:  5'- cGCgGUGCUggaccgcgcgcuggaCGCGGUggacacgcuggacGCGGGCGCGCGc -3'
miRNA:   3'- -CGgCACGAg--------------GCGCUA-------------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 84620 0.69 0.530419
Target:  5'- cGCCGcGCggccgCCGCGGcgcuggacaacgccaUggccGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCaCGa----GGCGCU---------------A----CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 98019 0.69 0.53618
Target:  5'- cGCCGgccaGgUCCGCGggGUGGcGCaGCGCGa -3'
miRNA:   3'- -CGGCa---CgAGGCGCuaCGCC-UG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 65779 0.69 0.544862
Target:  5'- cGCCG-GCggCgGCGAUggcgccgcccggcGCGGACGUGCc -3'
miRNA:   3'- -CGGCaCGa-GgCGCUA-------------CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 82995 0.69 0.545829
Target:  5'- cGCCGccacggCCGCGgcGCaGACGCGCGg -3'
miRNA:   3'- -CGGCacga--GGCGCuaCGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 52380 0.69 0.545829
Target:  5'- cCCGggGC-CCGCGGgggcgGCGGGCGcCGCc -3'
miRNA:   3'- cGGCa-CGaGGCGCUa----CGCCUGC-GCGu -5'
29429 5' -60.5 NC_006151.1 + 86324 0.69 0.545829
Target:  5'- gGCCGUGCUcgcCCGCGccGUGGGCcCGg- -3'
miRNA:   3'- -CGGCACGA---GGCGCuaCGCCUGcGCgu -5'
29429 5' -60.5 NC_006151.1 + 55902 0.69 0.553588
Target:  5'- cGCCGggcgaccgagcgGCUCCGCGAUGgaggccgugaUGGACGaGCu -3'
miRNA:   3'- -CGGCa-----------CGAGGCGCUAC----------GCCUGCgCGu -5'
29429 5' -60.5 NC_006151.1 + 65165 0.69 0.555533
Target:  5'- cGCCuUGCggCgCGCGAgGCGGAaGCGCGg -3'
miRNA:   3'- -CGGcACGa-G-GCGCUaCGCCUgCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 113104 0.69 0.555533
Target:  5'- aCCGgggGCggggCCGCGGacGCGGACGcCGCc -3'
miRNA:   3'- cGGCa--CGa---GGCGCUa-CGCCUGC-GCGu -5'
29429 5' -60.5 NC_006151.1 + 137934 0.69 0.555533
Target:  5'- cGCC-UGCUCCcCuuUGgGGACGCGCc -3'
miRNA:   3'- -CGGcACGAGGcGcuACgCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 136092 0.69 0.555533
Target:  5'- cGCUGcGCUCCaucGCGGU-CGGGCGcCGCGg -3'
miRNA:   3'- -CGGCaCGAGG---CGCUAcGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 72999 0.68 0.560404
Target:  5'- aGCCGguccgcguacgagUGCcgCUGCGAggcccagggauugGCGGugGCGCGg -3'
miRNA:   3'- -CGGC-------------ACGa-GGCGCUa------------CGCCugCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 4327 0.68 0.56138
Target:  5'- gGCCGgGCUgCGCGGcggcgaaggcggcGCGGACGCGg- -3'
miRNA:   3'- -CGGCaCGAgGCGCUa------------CGCCUGCGCgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.