miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 106662 0.68 0.565287
Target:  5'- cGCaCGUGCgcgaggCCGCGgcGCucGGCGCGCc -3'
miRNA:   3'- -CG-GCACGa-----GGCGCuaCGc-CUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 135893 0.68 0.565287
Target:  5'- cCCGUGUUcgucgccgCCGCGAccccgGCGGucguGCGCGCGc -3'
miRNA:   3'- cGGCACGA--------GGCGCUa----CGCC----UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 88543 0.68 0.565287
Target:  5'- cGCaCGcUGCgCCGCGGguaguagucGCGGACGaCGCAc -3'
miRNA:   3'- -CG-GC-ACGaGGCGCUa--------CGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 56655 0.68 0.575085
Target:  5'- gGCCGUGUaCCGCuGGUGgacgaCGGcgccGCGCGCGc -3'
miRNA:   3'- -CGGCACGaGGCG-CUAC-----GCC----UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 140299 0.68 0.575085
Target:  5'- cGCCG-GCgCCGCc-UGCgGGACGUGCGc -3'
miRNA:   3'- -CGGCaCGaGGCGcuACG-CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 137022 0.68 0.575085
Target:  5'- cGCCcUGCUCgGCc-UGcCGGACGCGUg -3'
miRNA:   3'- -CGGcACGAGgCGcuAC-GCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 66519 0.68 0.579015
Target:  5'- cGCCGgGCUCgCGCGcgccgcgcucuucGgGGGCGCGCGc -3'
miRNA:   3'- -CGGCaCGAG-GCGCua-----------CgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 22040 0.68 0.583936
Target:  5'- aGCagGUGCgcgcacccgUCCGCGAUGCGGuaccaggccacguGgGCGCGg -3'
miRNA:   3'- -CGg-CACG---------AGGCGCUACGCC-------------UgCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 31633 0.68 0.584921
Target:  5'- cGCCG-GCacgaGCGcacGCGGGCGCGCGg -3'
miRNA:   3'- -CGGCaCGagg-CGCua-CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 17112 0.68 0.584921
Target:  5'- cGCCGgggGCUCCggcgGCGGUGCugcgGGAgGCGg- -3'
miRNA:   3'- -CGGCa--CGAGG----CGCUACG----CCUgCGCgu -5'
29429 5' -60.5 NC_006151.1 + 85759 0.68 0.584921
Target:  5'- cCCGgGCUggCCGCGcugGCgcuGGACGCGCAc -3'
miRNA:   3'- cGGCaCGA--GGCGCua-CG---CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 73102 0.68 0.584921
Target:  5'- cGCCGUGCaccUCGCcg-GCGG-CGCGCc -3'
miRNA:   3'- -CGGCACGa--GGCGcuaCGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 65399 0.68 0.584921
Target:  5'- cGCCGUGa---GCGAgcgGCGGuACGCGUc -3'
miRNA:   3'- -CGGCACgaggCGCUa--CGCC-UGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 141404 0.68 0.594789
Target:  5'- cGgCGUG-UCCGgcgauCGGUGCGGGCGCGg- -3'
miRNA:   3'- -CgGCACgAGGC-----GCUACGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 78503 0.68 0.594789
Target:  5'- cGCCGUGgUgcacgcccCCGCGAUcGCGGACccgGCGgGg -3'
miRNA:   3'- -CGGCACgA--------GGCGCUA-CGCCUG---CGCgU- -5'
29429 5' -60.5 NC_006151.1 + 55044 0.68 0.594789
Target:  5'- cGCCGUggagaagauGCUCgGCGAggacccgGCGGGCucggccgcgGCGCGc -3'
miRNA:   3'- -CGGCA---------CGAGgCGCUa------CGCCUG---------CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 40221 0.68 0.598744
Target:  5'- cGCCGgcaaccccuaccugcUGCUCCGCuGA-GCGGG-GCGCc -3'
miRNA:   3'- -CGGC---------------ACGAGGCG-CUaCGCCUgCGCGu -5'
29429 5' -60.5 NC_006151.1 + 77588 0.68 0.601712
Target:  5'- gGCUGcUGCUgCCGCuGAcggagcuggaccucUGCGGcCGCGCGg -3'
miRNA:   3'- -CGGC-ACGA-GGCG-CU--------------ACGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 102235 0.68 0.603692
Target:  5'- cGCCGUGCgccgucgCCGCGcucuucgaGCccauccuGGGCGCGCu -3'
miRNA:   3'- -CGGCACGa------GGCGCua------CG-------CCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 138421 0.68 0.604683
Target:  5'- aGCaGUGCUUCGCuacaaaGUGCGGcagcaacgcgACGCGCAc -3'
miRNA:   3'- -CGgCACGAGGCGc-----UACGCC----------UGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.