miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 49671 0.71 0.443726
Target:  5'- gGCCGcGC-CCG-GAggacGCGGACGCGCc -3'
miRNA:   3'- -CGGCaCGaGGCgCUa---CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 50636 0.66 0.732396
Target:  5'- cGCCucgGCgacggCCGCGG-GCGGACccgagucguGCGCGg -3'
miRNA:   3'- -CGGca-CGa----GGCGCUaCGCCUG---------CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 51095 0.67 0.624521
Target:  5'- cGCCccuCUCCGCcucucacuccagGAUGCGGGCcucGCGCAg -3'
miRNA:   3'- -CGGcacGAGGCG------------CUACGCCUG---CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 51416 0.68 0.604683
Target:  5'- aGCgCGUGCacccgUCCGUGGccaugacGCGGACGcCGCGc -3'
miRNA:   3'- -CG-GCACG-----AGGCGCUa------CGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 51988 0.76 0.213871
Target:  5'- aGCa--GCUCCGCGGUGCcGGCGUGCAg -3'
miRNA:   3'- -CGgcaCGAGGCGCUACGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 52380 0.69 0.545829
Target:  5'- cCCGggGC-CCGCGGgggcgGCGGGCGcCGCc -3'
miRNA:   3'- cGGCa-CGaGGCGCUa----CGCCUGC-GCGu -5'
29429 5' -60.5 NC_006151.1 + 53519 0.7 0.452582
Target:  5'- cGCCGcGCgccCCGUGAgccGCuccaGGGCGCGCAg -3'
miRNA:   3'- -CGGCaCGa--GGCGCUa--CG----CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 54103 0.66 0.732396
Target:  5'- gGCCaUGUcggCUGCGAcggcggcggcUGCGGACGgGCu -3'
miRNA:   3'- -CGGcACGa--GGCGCU----------ACGCCUGCgCGu -5'
29429 5' -60.5 NC_006151.1 + 54604 0.69 0.517068
Target:  5'- cGgCGUGgUCC-CGGUGCgccGGGCGCGCc -3'
miRNA:   3'- -CgGCACgAGGcGCUACG---CCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 55044 0.68 0.594789
Target:  5'- cGCCGUggagaagauGCUCgGCGAggacccgGCGGGCucggccgcgGCGCGc -3'
miRNA:   3'- -CGGCA---------CGAGgCGCUa------CGCCUG---------CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 55214 0.66 0.693737
Target:  5'- aGCCGgGCUUCGgGcaccacgGCGccGGCGCGCAg -3'
miRNA:   3'- -CGGCaCGAGGCgCua-----CGC--CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 55416 0.73 0.338272
Target:  5'- gGCCcUGCgcgCCGCGcagGCGGGCGCGg- -3'
miRNA:   3'- -CGGcACGa--GGCGCua-CGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 55458 0.7 0.452582
Target:  5'- cGCCG-GCcCCGCcg-GgGGGCGCGCGc -3'
miRNA:   3'- -CGGCaCGaGGCGcuaCgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 55902 0.69 0.553588
Target:  5'- cGCCGggcgaccgagcgGCUCCGCGAUGgaggccgugaUGGACGaGCu -3'
miRNA:   3'- -CGGCa-----------CGAGGCGCUAC----------GCCUGCgCGu -5'
29429 5' -60.5 NC_006151.1 + 56287 0.68 0.614596
Target:  5'- aCC-UGCcCCGCGGcggagGCGGACGcCGCGc -3'
miRNA:   3'- cGGcACGaGGCGCUa----CGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 56564 0.75 0.251666
Target:  5'- uGCCGgGCgacgcgCCGCcgcccgacgggcuGGUGCGGACGCGCc -3'
miRNA:   3'- -CGGCaCGa-----GGCG-------------CUACGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 56655 0.68 0.575085
Target:  5'- gGCCGUGUaCCGCuGGUGgacgaCGGcgccGCGCGCGc -3'
miRNA:   3'- -CGGCACGaGGCG-CUAC-----GCC----UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 58333 0.67 0.624521
Target:  5'- cGCCG-GcCUCCGCGuagGC--GCGCGCGa -3'
miRNA:   3'- -CGGCaC-GAGGCGCua-CGccUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 59050 0.66 0.693737
Target:  5'- aGCCG-GCUCCag---GCGGGCagGCGCAg -3'
miRNA:   3'- -CGGCaCGAGGcgcuaCGCCUG--CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 59131 0.66 0.712229
Target:  5'- uGCCGgugggugGCgcCCGCGG-GCGGGuccaggccggcguCGCGCAg -3'
miRNA:   3'- -CGGCa------CGa-GGCGCUaCGCCU-------------GCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.