miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 59502 0.67 0.654301
Target:  5'- cCCGgcgGcCUCCGCGAcGC--GCGCGCAg -3'
miRNA:   3'- cGGCa--C-GAGGCGCUaCGccUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 59819 0.67 0.634452
Target:  5'- cGCCGcUG-UCCGCGAUGuCGGcCGC-CAc -3'
miRNA:   3'- -CGGC-ACgAGGCGCUAC-GCCuGCGcGU- -5'
29429 5' -60.5 NC_006151.1 + 61437 0.71 0.409308
Target:  5'- cGCCGcgGCgcccgcCCGCGuccgccgccauGUGCGGGCcGCGCAa -3'
miRNA:   3'- -CGGCa-CGa-----GGCGC-----------UACGCCUG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 62040 0.67 0.634452
Target:  5'- cCCGcUGCgCCGCGugGCGGugcACGCGCGc -3'
miRNA:   3'- cGGC-ACGaGGCGCuaCGCC---UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 64319 0.66 0.72571
Target:  5'- cGCCGUGCuggccucgcaccacgUCgGCGGgaagcGCGGGCcgucggccccccaGCGCAc -3'
miRNA:   3'- -CGGCACG---------------AGgCGCUa----CGCCUG-------------CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 64478 0.74 0.289512
Target:  5'- cGCCGcgGCggggacgcCCGCGGgcgcgggcgGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa-CGa-------GGCGCUa--------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 64619 0.68 0.604683
Target:  5'- cGCCGcGCcgccggCCGCGGggcGCGGcgcccCGCGCAg -3'
miRNA:   3'- -CGGCaCGa-----GGCGCUa--CGCCu----GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 64939 0.66 0.703495
Target:  5'- cGCgCGUcaGCgccuggCCGCGcUGCGGGCGCa-- -3'
miRNA:   3'- -CG-GCA--CGa-----GGCGCuACGCCUGCGcgu -5'
29429 5' -60.5 NC_006151.1 + 65165 0.69 0.555533
Target:  5'- cGCCuUGCggCgCGCGAgGCGGAaGCGCGg -3'
miRNA:   3'- -CGGcACGa-G-GCGCUaCGCCUgCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 65399 0.68 0.584921
Target:  5'- cGCCGUGa---GCGAgcgGCGGuACGCGUc -3'
miRNA:   3'- -CGGCACgaggCGCUa--CGCC-UGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 65779 0.69 0.544862
Target:  5'- cGCCG-GCggCgGCGAUggcgccgcccggcGCGGACGUGCc -3'
miRNA:   3'- -CGGCaCGa-GgCGCUA-------------CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 66519 0.68 0.579015
Target:  5'- cGCCGgGCUCgCGCGcgccgcgcucuucGgGGGCGCGCGc -3'
miRNA:   3'- -CGGCaCGAG-GCGCua-----------CgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 66864 0.66 0.683931
Target:  5'- gGCCGggGCggCGCGAa--GGGCGCGCc -3'
miRNA:   3'- -CGGCa-CGagGCGCUacgCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 67281 0.7 0.470579
Target:  5'- cGCC-UGCgCCGCuGGUGcCGcGACGCGCGc -3'
miRNA:   3'- -CGGcACGaGGCG-CUAC-GC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 69122 0.78 0.159742
Target:  5'- cGCCGcGcCUCCGCGG-GCaGGGCGCGCGg -3'
miRNA:   3'- -CGGCaC-GAGGCGCUaCG-CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 69444 0.67 0.624521
Target:  5'- cGCCGUucgcgucCUCgCGCGccGCGGGCGCcgGCAc -3'
miRNA:   3'- -CGGCAc------GAG-GCGCuaCGCCUGCG--CGU- -5'
29429 5' -60.5 NC_006151.1 + 69760 0.66 0.693737
Target:  5'- cGCCGggGC-CaCGCGccGCGcGCGCGCGu -3'
miRNA:   3'- -CGGCa-CGaG-GCGCuaCGCcUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 71016 0.72 0.376603
Target:  5'- cGCCaUGCgCCGCGAgcucGCGGAgcUGCGCGc -3'
miRNA:   3'- -CGGcACGaGGCGCUa---CGCCU--GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 71070 0.7 0.498234
Target:  5'- gGCCGUGgUCUucuaccaccacgGCGccGCGGGCGCGg- -3'
miRNA:   3'- -CGGCACgAGG------------CGCuaCGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 71210 0.74 0.302857
Target:  5'- aGCuCGUG-UCCGUGAccGUGGGCGCGCGc -3'
miRNA:   3'- -CG-GCACgAGGCGCUa-CGCCUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.