miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 71958 0.66 0.722833
Target:  5'- gGCCGccucgGCguugUCGCGGUGCGGcGgGgGCAg -3'
miRNA:   3'- -CGGCa----CGa---GGCGCUACGCC-UgCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 72266 0.69 0.526591
Target:  5'- cGCCGagcgGCguggCCagcauGCGGUGCGGcgucACGCGCGu -3'
miRNA:   3'- -CGGCa---CGa---GG-----CGCUACGCC----UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 72999 0.68 0.560404
Target:  5'- aGCCGguccgcguacgagUGCcgCUGCGAggcccagggauugGCGGugGCGCGg -3'
miRNA:   3'- -CGGC-------------ACGa-GGCGCUa------------CGCCugCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 73102 0.68 0.584921
Target:  5'- cGCCGUGCaccUCGCcg-GCGG-CGCGCc -3'
miRNA:   3'- -CGGCACGa--GGCGcuaCGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 75966 0.66 0.722833
Target:  5'- cGCuCGUGCUUCGUGAggaagaagGUGucguCGCGCAc -3'
miRNA:   3'- -CG-GCACGAGGCGCUa-------CGCcu--GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 76628 0.73 0.309705
Target:  5'- gGCCGggcGCUCCaucgugugGCGAcgaccgcgUGCGGGCGCGUg -3'
miRNA:   3'- -CGGCa--CGAGG--------CGCU--------ACGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 76797 0.74 0.283013
Target:  5'- cGCCGUacagcGCcCCgGCGAggGCGGGCGCGUAg -3'
miRNA:   3'- -CGGCA-----CGaGG-CGCUa-CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 77089 0.71 0.409308
Target:  5'- -aCGUGCgagCUgaagcgcggGCGcgGCGGGCGCGCGc -3'
miRNA:   3'- cgGCACGa--GG---------CGCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 77588 0.68 0.601712
Target:  5'- gGCUGcUGCUgCCGCuGAcggagcuggaccucUGCGGcCGCGCGg -3'
miRNA:   3'- -CGGC-ACGA-GGCG-CU--------------ACGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 77924 0.72 0.353258
Target:  5'- gGCCGUGg-UgGUGAaggGCGGGCGCGCGg -3'
miRNA:   3'- -CGGCACgaGgCGCUa--CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 78503 0.68 0.594789
Target:  5'- cGCCGUGgUgcacgcccCCGCGAUcGCGGACccgGCGgGg -3'
miRNA:   3'- -CGGCACgA--------GGCGCUA-CGCCUG---CGCgU- -5'
29429 5' -60.5 NC_006151.1 + 78699 0.68 0.613604
Target:  5'- gGCCGggGCcucgucgCCGCGAcgGCgcccgugGGGCGCGCGc -3'
miRNA:   3'- -CGGCa-CGa------GGCGCUa-CG-------CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 81554 0.74 0.270365
Target:  5'- cGCgGUGCacauggCCGUGGUGCGGagcagggucucGCGCGCGu -3'
miRNA:   3'- -CGgCACGa-----GGCGCUACGCC-----------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 82995 0.69 0.545829
Target:  5'- cGCCGccacggCCGCGgcGCaGACGCGCGg -3'
miRNA:   3'- -CGGCacga--GGCGCuaCGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 83350 0.77 0.180613
Target:  5'- -aCGUGCUCCccggcGCGcgcGCGGGCGCGCAg -3'
miRNA:   3'- cgGCACGAGG-----CGCua-CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 84262 0.68 0.618565
Target:  5'- uGCgCGUGCUCgaCGUGAcGCGccugcccugcacccaGACGCGCGg -3'
miRNA:   3'- -CG-GCACGAG--GCGCUaCGC---------------CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 84356 0.69 0.526591
Target:  5'- cGCCGgcccgcgGCggugaUCGCGAUcGCGG-CGCGCGg -3'
miRNA:   3'- -CGGCa------CGa----GGCGCUA-CGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 84620 0.69 0.530419
Target:  5'- cGCCGcGCggccgCCGCGGcgcuggacaacgccaUggccGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCaCGa----GGCGCU---------------A----CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 85610 0.67 0.648351
Target:  5'- cGCuCGUGCccaacgcgccgccgCCGCGcgGCgccagcggGGACGCGCc -3'
miRNA:   3'- -CG-GCACGa-------------GGCGCuaCG--------CCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 85759 0.68 0.584921
Target:  5'- cCCGgGCUggCCGCGcugGCgcuGGACGCGCAc -3'
miRNA:   3'- cGGCaCGA--GGCGCua-CG---CCUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.