Results 121 - 140 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29429 | 5' | -60.5 | NC_006151.1 | + | 98019 | 0.69 | 0.53618 |
Target: 5'- cGCCGgccaGgUCCGCGggGUGGcGCaGCGCGa -3' miRNA: 3'- -CGGCa---CgAGGCGCuaCGCC-UG-CGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 98291 | 0.66 | 0.722833 |
Target: 5'- cGCCGUcGCcaCgGUGGUGCaGuCGCGCAu -3' miRNA: 3'- -CGGCA-CGa-GgCGCUACGcCuGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 98336 | 0.73 | 0.323754 |
Target: 5'- gGCCGcGggCCGCGAgacgcccGCGGGCGUGCGc -3' miRNA: 3'- -CGGCaCgaGGCGCUa------CGCCUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 98633 | 0.7 | 0.452582 |
Target: 5'- cGCCGc-CUUCGaCGAggcccugGCGGGCGCGCGc -3' miRNA: 3'- -CGGCacGAGGC-GCUa------CGCCUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 99304 | 0.8 | 0.127597 |
Target: 5'- cGCCGUGCUggaCCGCGcgccccgccUGaCGGACGCGCAg -3' miRNA: 3'- -CGGCACGA---GGCGCu--------AC-GCCUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 99975 | 0.7 | 0.498234 |
Target: 5'- cGCCGcGCUCgugGCGgcGCuGGCGCGCGa -3' miRNA: 3'- -CGGCaCGAGg--CGCuaCGcCUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 100686 | 0.68 | 0.614596 |
Target: 5'- cGUCGcgacGCUCCGCGAgaccuggacCGaGGCGCGCGa -3' miRNA: 3'- -CGGCa---CGAGGCGCUac-------GC-CUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 100835 | 0.66 | 0.703495 |
Target: 5'- cGCCGUGCcgcucUCgGCGA-GCGucaACGUGCGc -3' miRNA: 3'- -CGGCACG-----AGgCGCUaCGCc--UGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 100877 | 0.69 | 0.522774 |
Target: 5'- cGCCGUGaaccuggaggugCUGCGccGCGGcGCGCGCGc -3' miRNA: 3'- -CGGCACga----------GGCGCuaCGCC-UGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 101652 | 0.66 | 0.713196 |
Target: 5'- cGCCGUGC-CCGCGcucuacggcGUGGGCGagaCGUAc -3' miRNA: 3'- -CGGCACGaGGCGCua-------CGCCUGC---GCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 102235 | 0.68 | 0.603692 |
Target: 5'- cGCCGUGCgccgucgCCGCGcucuucgaGCccauccuGGGCGCGCu -3' miRNA: 3'- -CGGCACGa------GGCGCua------CG-------CCUGCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 102680 | 0.66 | 0.713196 |
Target: 5'- cGCCGUGga-CGCGGgggcgcccggcGCGGGCgGCGCGg -3' miRNA: 3'- -CGGCACgagGCGCUa----------CGCCUG-CGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 102782 | 0.71 | 0.400967 |
Target: 5'- gGUCGgcgacGcCUCCGCGAguacuuucUGCGcGGCGCGCAg -3' miRNA: 3'- -CGGCa----C-GAGGCGCU--------ACGC-CUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 102918 | 0.66 | 0.713196 |
Target: 5'- cGCUG-GCggCCGcCGAggaGCGGcuGCGCGCGc -3' miRNA: 3'- -CGGCaCGa-GGC-GCUa--CGCC--UGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 103321 | 0.66 | 0.693737 |
Target: 5'- cGCCGaGCUgCGCacgcuGGUGCaGGCgGCGCAg -3' miRNA: 3'- -CGGCaCGAgGCG-----CUACGcCUG-CGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 103821 | 0.67 | 0.664204 |
Target: 5'- gGCCGUGgCggcggCCGUGGagaugcucggGCGGcugcGCGCGCAg -3' miRNA: 3'- -CGGCAC-Ga----GGCGCUa---------CGCC----UGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 104004 | 0.75 | 0.24644 |
Target: 5'- gGCCGUggagGCgcgCCGCGcgGCGGagguggagcGCGCGCAg -3' miRNA: 3'- -CGGCA----CGa--GGCGCuaCGCC---------UGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 104460 | 0.75 | 0.24644 |
Target: 5'- cGCCGUggGCUUCGuCGggGCGGACaugGCGCAc -3' miRNA: 3'- -CGGCA--CGAGGC-GCuaCGCCUG---CGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 104550 | 0.66 | 0.693737 |
Target: 5'- gGCCGaGCUggCCGCccugGgcGCGcGGCGCGCGg -3' miRNA: 3'- -CGGCaCGA--GGCG----CuaCGC-CUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 104648 | 0.69 | 0.517068 |
Target: 5'- -aCGUGCgcgcggCCGcCGAcGCGGcGCGCGCGc -3' miRNA: 3'- cgGCACGa-----GGC-GCUaCGCC-UGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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