miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 133343 0.74 0.283013
Target:  5'- gGCCG-GUUCCGCGGcgGCGGugGUGg- -3'
miRNA:   3'- -CGGCaCGAGGCGCUa-CGCCugCGCgu -5'
29429 5' -60.5 NC_006151.1 + 132092 0.69 0.507614
Target:  5'- cGCCGUcCUCCuCGAUGaGGccgGCGCGCAc -3'
miRNA:   3'- -CGGCAcGAGGcGCUACgCC---UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 131939 0.66 0.703495
Target:  5'- uGCCGUaGCUggCCacggGCGAggGCGGGCG-GCAg -3'
miRNA:   3'- -CGGCA-CGA--GG----CGCUa-CGCCUGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 131054 0.66 0.693737
Target:  5'- gGCCGgagGCcgucuccaugCCGCGGa--GGGCGCGCGa -3'
miRNA:   3'- -CGGCa--CGa---------GGCGCUacgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 130924 0.7 0.478795
Target:  5'- gGCCGgGC-CCGCGGggGCGGGggcggcgggggguCGCGCGg -3'
miRNA:   3'- -CGGCaCGaGGCGCUa-CGCCU-------------GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 130669 0.67 0.674084
Target:  5'- cGUCaGUGC-CCGCGggGCGcGGCGCa-- -3'
miRNA:   3'- -CGG-CACGaGGCGCuaCGC-CUGCGcgu -5'
29429 5' -60.5 NC_006151.1 + 130405 0.74 0.296126
Target:  5'- cGCCucGC-CCGCGAgcGCGGGCGCGCc -3'
miRNA:   3'- -CGGcaCGaGGCGCUa-CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 130298 0.66 0.683931
Target:  5'- nGCCGg---CCGaCGgcGCGGAgCGCGCGc -3'
miRNA:   3'- -CGGCacgaGGC-GCuaCGCCU-GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 130266 0.7 0.488932
Target:  5'- gGCCGgcgcGCggCCcCGAggccGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa---CGa-GGcGCUa---CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 130111 0.67 0.654301
Target:  5'- gGCCGUGaagcCCGgGuucuggccGUGGGCGCGCGc -3'
miRNA:   3'- -CGGCACga--GGCgCua------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 129804 0.66 0.732396
Target:  5'- cCCGcaugagGC-CCGUGAgcGCGGAgCGCGCGg -3'
miRNA:   3'- cGGCa-----CGaGGCGCUa-CGCCU-GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 129580 0.66 0.683931
Target:  5'- cGUCGcGCugcucccagaacUCCGCGA-GCGGGCacguGCGCAc -3'
miRNA:   3'- -CGGCaCG------------AGGCGCUaCGCCUG----CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 127990 0.68 0.604683
Target:  5'- uGCgGcgGCUCCGCGucGCGGuCGCGgGg -3'
miRNA:   3'- -CGgCa-CGAGGCGCuaCGCCuGCGCgU- -5'
29429 5' -60.5 NC_006151.1 + 127311 0.68 0.614596
Target:  5'- gGCCGUcguccgcgcgGgUCCGCGG-GCGGGgGUGCu -3'
miRNA:   3'- -CGGCA----------CgAGGCGCUaCGCCUgCGCGu -5'
29429 5' -60.5 NC_006151.1 + 127232 0.67 0.644381
Target:  5'- gGCCGUcacacgcgccaGCUCuUGCGgcGC-GACGCGCGg -3'
miRNA:   3'- -CGGCA-----------CGAG-GCGCuaCGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 125579 0.67 0.634452
Target:  5'- uGCgCGUGC-CCgGCGAgcGCGGcACGUGCu -3'
miRNA:   3'- -CG-GCACGaGG-CGCUa-CGCC-UGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 124772 0.66 0.703495
Target:  5'- uCCGcGcCUCCGaGA-GCGuGACGCGCAa -3'
miRNA:   3'- cGGCaC-GAGGCgCUaCGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 124075 0.69 0.517068
Target:  5'- gGCCGUGCgcgcggCCGCGAccgaGCGgGAC-CGCu -3'
miRNA:   3'- -CGGCACGa-----GGCGCUa---CGC-CUGcGCGu -5'
29429 5' -60.5 NC_006151.1 + 123903 0.72 0.353258
Target:  5'- cGCCGUGCggcgcggcggCCGUGAcGCGGGC-CGCc -3'
miRNA:   3'- -CGGCACGa---------GGCGCUaCGCCUGcGCGu -5'
29429 5' -60.5 NC_006151.1 + 123228 0.7 0.461534
Target:  5'- cGCCGgGUUCCGCGca-CGG-CGCGCGu -3'
miRNA:   3'- -CGGCaCGAGGCGCuacGCCuGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.