miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 122943 0.72 0.392735
Target:  5'- cGCCGacgGCggcgCCGCGGggggcGCGGACGCcgGCGa -3'
miRNA:   3'- -CGGCa--CGa---GGCGCUa----CGCCUGCG--CGU- -5'
29429 5' -60.5 NC_006151.1 + 122431 0.66 0.703495
Target:  5'- cGCCGagGC-CCGgGAgGCGGAgGCgGCGu -3'
miRNA:   3'- -CGGCa-CGaGGCgCUaCGCCUgCG-CGU- -5'
29429 5' -60.5 NC_006151.1 + 122370 0.71 0.442846
Target:  5'- uGCaCGgGCUCgacgaggCGCGccGCGGGCGCGCGc -3'
miRNA:   3'- -CG-GCaCGAG-------GCGCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 121638 0.66 0.703495
Target:  5'- cCCGUGgccuCUCuCGCG--GCGGACGgGCGg -3'
miRNA:   3'- cGGCAC----GAG-GCGCuaCGCCUGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 121184 0.73 0.330955
Target:  5'- gGCCGUGCUgcaCGCGcucgGGGCGCGCAc -3'
miRNA:   3'- -CGGCACGAg--GCGCuacgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 120794 0.68 0.614596
Target:  5'- gGCCGacgcggaGCgcgCCGCGcgcgagGUGCuGGACGCGCc -3'
miRNA:   3'- -CGGCa------CGa--GGCGC------UACG-CCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 119746 0.67 0.654301
Target:  5'- cGCCGUGgaCCgGCucugGCGGACGUGg- -3'
miRNA:   3'- -CGGCACgaGG-CGcua-CGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 119049 0.66 0.693737
Target:  5'- -aCGgcgGCgCCGCGGccgccuccGCGGGCGCGCc -3'
miRNA:   3'- cgGCa--CGaGGCGCUa-------CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 119021 0.73 0.316671
Target:  5'- cCCGUGCUCUcCGAgGCGGGCGC-CAa -3'
miRNA:   3'- cGGCACGAGGcGCUaCGCCUGCGcGU- -5'
29429 5' -60.5 NC_006151.1 + 118757 0.74 0.272858
Target:  5'- gGCCGUGC-CaCGCGcGUGCGGaaccuggacgcggugGCGCGCGg -3'
miRNA:   3'- -CGGCACGaG-GCGC-UACGCC---------------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 118448 0.7 0.461534
Target:  5'- cGCgCG-GCUCgGCcugGccGCGGACGCGCAc -3'
miRNA:   3'- -CG-GCaCGAGgCG---CuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 118202 0.68 0.604683
Target:  5'- cGCCGgGCacguggCCGUGGUgGCGGGCGCcCGg -3'
miRNA:   3'- -CGGCaCGa-----GGCGCUA-CGCCUGCGcGU- -5'
29429 5' -60.5 NC_006151.1 + 118142 0.66 0.722833
Target:  5'- cGCCGacgacgCCGCG--GCGGugGCGCc -3'
miRNA:   3'- -CGGCacga--GGCGCuaCGCCugCGCGu -5'
29429 5' -60.5 NC_006151.1 + 118090 0.66 0.722833
Target:  5'- cGCCGaucgaggcgcUGCgCCGCGAccUGCuGGcgcugcucgugGCGCGCAg -3'
miRNA:   3'- -CGGC----------ACGaGGCGCU--ACG-CC-----------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 118053 0.66 0.703495
Target:  5'- aCCGUGCgcgCCGCGccGCuGGgcuACGUGUAc -3'
miRNA:   3'- cGGCACGa--GGCGCuaCG-CC---UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 115554 0.72 0.353258
Target:  5'- cGgCGUacucGC-CCGCGG-GCGGGCGCGCGg -3'
miRNA:   3'- -CgGCA----CGaGGCGCUaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 115173 0.7 0.493573
Target:  5'- aGCCGcgcggcagggggcGCUCCagccagcGCGccGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa------------CGAGG-------CGCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 114314 0.73 0.323754
Target:  5'- -aCGUGCUgCGCGAcgggggccUGCGcGACGUGCGc -3'
miRNA:   3'- cgGCACGAgGCGCU--------ACGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 114135 0.66 0.713196
Target:  5'- cGCCGccGCcgagCCGCGGcuCGGGCGCaGCGa -3'
miRNA:   3'- -CGGCa-CGa---GGCGCUacGCCUGCG-CGU- -5'
29429 5' -60.5 NC_006151.1 + 113630 0.71 0.409308
Target:  5'- cGCgCGUGCUCUuugaGCGcgGCG-ACGCGCu -3'
miRNA:   3'- -CG-GCACGAGG----CGCuaCGCcUGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.