miRNA display CGI


Results 61 - 80 of 215 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 113503 0.73 0.316671
Target:  5'- cCCGUGCUCgagggcuuCGUG--GCGGACGCGCGc -3'
miRNA:   3'- cGGCACGAG--------GCGCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 113286 0.67 0.652318
Target:  5'- cGCCGcggcguacgcgcGCUaCCGCGcgGUGGACGC-CAc -3'
miRNA:   3'- -CGGCa-----------CGA-GGCGCuaCGCCUGCGcGU- -5'
29429 5' -60.5 NC_006151.1 + 113224 0.66 0.683931
Target:  5'- cGCCG-GCaCCGCGccGUGGACGaGUAc -3'
miRNA:   3'- -CGGCaCGaGGCGCuaCGCCUGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 113104 0.69 0.555533
Target:  5'- aCCGgggGCggggCCGCGGacGCGGACGcCGCc -3'
miRNA:   3'- cGGCa--CGa---GGCGCUa-CGCCUGC-GCGu -5'
29429 5' -60.5 NC_006151.1 + 113037 0.73 0.309705
Target:  5'- cGCCGggUGCUgCGCGGcgGCGGA-GCGCGa -3'
miRNA:   3'- -CGGC--ACGAgGCGCUa-CGCCUgCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 112944 0.7 0.46967
Target:  5'- gGCCGcgacGCg-CGCGAUguuuuucaccgugGCGGACGCGCGc -3'
miRNA:   3'- -CGGCa---CGagGCGCUA-------------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 112838 0.75 0.264214
Target:  5'- cGCgCGUGCUCaCGCuc-GUGGACGUGCAg -3'
miRNA:   3'- -CG-GCACGAG-GCGcuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 112777 0.66 0.710292
Target:  5'- uUCGUGUa-CGUGAUggacaagcacuuucGCGGGCGCGCGu -3'
miRNA:   3'- cGGCACGagGCGCUA--------------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 106881 0.66 0.713196
Target:  5'- gGCCGUgacGCUgUGCGAccUGCGcGAcccCGCGCu -3'
miRNA:   3'- -CGGCA---CGAgGCGCU--ACGC-CU---GCGCGu -5'
29429 5' -60.5 NC_006151.1 + 106662 0.68 0.565287
Target:  5'- cGCaCGUGCgcgaggCCGCGgcGCucGGCGCGCc -3'
miRNA:   3'- -CG-GCACGa-----GGCGCuaCGc-CUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 106516 0.7 0.48339
Target:  5'- cGCCGUGCcgggCGCGcuggccaccuucaccGUGCuGGCGCGCAu -3'
miRNA:   3'- -CGGCACGag--GCGC---------------UACGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 106327 0.69 0.526591
Target:  5'- cGCgGUGCUggaccgcgcgcuggaCGCGGUggacacgcuggacGCGGGCGCGCGc -3'
miRNA:   3'- -CGgCACGAg--------------GCGCUA-------------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 105730 0.66 0.712229
Target:  5'- cGCCGUGCgcgcgCCugaagcaGCGcgugGCGG-CGCGCc -3'
miRNA:   3'- -CGGCACGa----GG-------CGCua--CGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 104886 0.74 0.283013
Target:  5'- cGCC-UGCUgCGCGAggugGUGGACGCgGCGg -3'
miRNA:   3'- -CGGcACGAgGCGCUa---CGCCUGCG-CGU- -5'
29429 5' -60.5 NC_006151.1 + 104800 0.77 0.176254
Target:  5'- cGCuCGUGCgCCGCGAccugGCGGcgGCGCGCGa -3'
miRNA:   3'- -CG-GCACGaGGCGCUa---CGCC--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 104648 0.69 0.517068
Target:  5'- -aCGUGCgcgcggCCGcCGAcGCGGcGCGCGCGc -3'
miRNA:   3'- cgGCACGa-----GGC-GCUaCGCC-UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 104550 0.66 0.693737
Target:  5'- gGCCGaGCUggCCGCccugGgcGCGcGGCGCGCGg -3'
miRNA:   3'- -CGGCaCGA--GGCG----CuaCGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 104460 0.75 0.24644
Target:  5'- cGCCGUggGCUUCGuCGggGCGGACaugGCGCAc -3'
miRNA:   3'- -CGGCA--CGAGGC-GCuaCGCCUG---CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 104004 0.75 0.24644
Target:  5'- gGCCGUggagGCgcgCCGCGcgGCGGagguggagcGCGCGCAg -3'
miRNA:   3'- -CGGCA----CGa--GGCGCuaCGCC---------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 103821 0.67 0.664204
Target:  5'- gGCCGUGgCggcggCCGUGGagaugcucggGCGGcugcGCGCGCAg -3'
miRNA:   3'- -CGGCAC-Ga----GGCGCUa---------CGCC----UGCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.