miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 103321 0.66 0.693737
Target:  5'- cGCCGaGCUgCGCacgcuGGUGCaGGCgGCGCAg -3'
miRNA:   3'- -CGGCaCGAgGCG-----CUACGcCUG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 102918 0.66 0.713196
Target:  5'- cGCUG-GCggCCGcCGAggaGCGGcuGCGCGCGc -3'
miRNA:   3'- -CGGCaCGa-GGC-GCUa--CGCC--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 102782 0.71 0.400967
Target:  5'- gGUCGgcgacGcCUCCGCGAguacuuucUGCGcGGCGCGCAg -3'
miRNA:   3'- -CGGCa----C-GAGGCGCU--------ACGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 102680 0.66 0.713196
Target:  5'- cGCCGUGga-CGCGGgggcgcccggcGCGGGCgGCGCGg -3'
miRNA:   3'- -CGGCACgagGCGCUa----------CGCCUG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 102235 0.68 0.603692
Target:  5'- cGCCGUGCgccgucgCCGCGcucuucgaGCccauccuGGGCGCGCu -3'
miRNA:   3'- -CGGCACGa------GGCGCua------CG-------CCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 101652 0.66 0.713196
Target:  5'- cGCCGUGC-CCGCGcucuacggcGUGGGCGagaCGUAc -3'
miRNA:   3'- -CGGCACGaGGCGCua-------CGCCUGC---GCGU- -5'
29429 5' -60.5 NC_006151.1 + 100877 0.69 0.522774
Target:  5'- cGCCGUGaaccuggaggugCUGCGccGCGGcGCGCGCGc -3'
miRNA:   3'- -CGGCACga----------GGCGCuaCGCC-UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 100835 0.66 0.703495
Target:  5'- cGCCGUGCcgcucUCgGCGA-GCGucaACGUGCGc -3'
miRNA:   3'- -CGGCACG-----AGgCGCUaCGCc--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 100686 0.68 0.614596
Target:  5'- cGUCGcgacGCUCCGCGAgaccuggacCGaGGCGCGCGa -3'
miRNA:   3'- -CGGCa---CGAGGCGCUac-------GC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 99975 0.7 0.498234
Target:  5'- cGCCGcGCUCgugGCGgcGCuGGCGCGCGa -3'
miRNA:   3'- -CGGCaCGAGg--CGCuaCGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 99304 0.8 0.127597
Target:  5'- cGCCGUGCUggaCCGCGcgccccgccUGaCGGACGCGCAg -3'
miRNA:   3'- -CGGCACGA---GGCGCu--------AC-GCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 98633 0.7 0.452582
Target:  5'- cGCCGc-CUUCGaCGAggcccugGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCacGAGGC-GCUa------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 98336 0.73 0.323754
Target:  5'- gGCCGcGggCCGCGAgacgcccGCGGGCGUGCGc -3'
miRNA:   3'- -CGGCaCgaGGCGCUa------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 98291 0.66 0.722833
Target:  5'- cGCCGUcGCcaCgGUGGUGCaGuCGCGCAu -3'
miRNA:   3'- -CGGCA-CGa-GgCGCUACGcCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 98019 0.69 0.53618
Target:  5'- cGCCGgccaGgUCCGCGggGUGGcGCaGCGCGa -3'
miRNA:   3'- -CGGCa---CgAGGCGCuaCGCC-UG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 97813 0.69 0.506672
Target:  5'- gGCCGUGCgccggUCGCGGUaguuggucgucacGUGcGCGCGCAg -3'
miRNA:   3'- -CGGCACGa----GGCGCUA-------------CGCcUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 97611 0.71 0.409308
Target:  5'- gGCaCGUGCacCUGCGA-GCGG-CGCGCGg -3'
miRNA:   3'- -CG-GCACGa-GGCGCUaCGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 97459 0.69 0.520869
Target:  5'- cGCCGaGCUcgggcaggcggcucaCCGCcacGUGGACGCGCAg -3'
miRNA:   3'- -CGGCaCGA---------------GGCGcuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 97405 0.73 0.316671
Target:  5'- uGCCGUGgaUCGCGuUGUcGACGCGCGu -3'
miRNA:   3'- -CGGCACgaGGCGCuACGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 96861 0.66 0.722833
Target:  5'- aCCGcGC-CCGCcggGCGcGGCGCGCGc -3'
miRNA:   3'- cGGCaCGaGGCGcuaCGC-CUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.