miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 96579 0.68 0.604683
Target:  5'- cGCCGccucGCggCGCGAggcgccgggcGCGGGCGCGCc -3'
miRNA:   3'- -CGGCa---CGagGCGCUa---------CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 95202 0.66 0.703495
Target:  5'- gGCCGaUGC-CCaGCGA-GCGGcUGCGCc -3'
miRNA:   3'- -CGGC-ACGaGG-CGCUaCGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 94932 1.1 0.000925
Target:  5'- cGCCGUGCUCCGCGAUGCGGACGCGCAg -3'
miRNA:   3'- -CGGCACGAGGCGCUACGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 93552 0.68 0.604683
Target:  5'- cGCCaUGggaaaguccgCCGCGGggGCGGGCGCGCc -3'
miRNA:   3'- -CGGcACga--------GGCGCUa-CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 92735 0.67 0.664204
Target:  5'- gGCCaUGCUCaCGcCGgcGCGGcACGgGCAc -3'
miRNA:   3'- -CGGcACGAG-GC-GCuaCGCC-UGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 92666 0.69 0.507614
Target:  5'- cGCCcUGCUgCCgGCGGccGgGGACGCGCGc -3'
miRNA:   3'- -CGGcACGA-GG-CGCUa-CgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 92171 0.66 0.693737
Target:  5'- gGCCGUGCgcgCCGaCGgcGaCGGggccgccgACGCGCc -3'
miRNA:   3'- -CGGCACGa--GGC-GCuaC-GCC--------UGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 90678 0.7 0.452582
Target:  5'- gGCCGcuUGUcccCCGCGGcgggggcgGCGGACGCGCc -3'
miRNA:   3'- -CGGC--ACGa--GGCGCUa-------CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 89884 0.67 0.664204
Target:  5'- cGCCGcucggGCUCgGCGGUGgGGuCG-GCGu -3'
miRNA:   3'- -CGGCa----CGAGgCGCUACgCCuGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 89724 0.67 0.674084
Target:  5'- cGCCGgccGCggCCGCGGUgGUGGGCGagacgaGCu -3'
miRNA:   3'- -CGGCa--CGa-GGCGCUA-CGCCUGCg-----CGu -5'
29429 5' -60.5 NC_006151.1 + 89054 0.67 0.674084
Target:  5'- cCCGUGCgcgguggCCuuguCGccGUGGACGCGCGu -3'
miRNA:   3'- cGGCACGa------GGc---GCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 88543 0.68 0.565287
Target:  5'- cGCaCGcUGCgCCGCGGguaguagucGCGGACGaCGCAc -3'
miRNA:   3'- -CG-GC-ACGaGGCGCUa--------CGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 86560 0.72 0.375809
Target:  5'- cGCCGUuccggcaGCUCU-CGgcGCGGGCGCGCu -3'
miRNA:   3'- -CGGCA-------CGAGGcGCuaCGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 86482 0.66 0.732396
Target:  5'- cGCaCGUggcGCUCUGCGugaucggGCGG-CGCGUg -3'
miRNA:   3'- -CG-GCA---CGAGGCGCua-----CGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 86324 0.69 0.545829
Target:  5'- gGCCGUGCUcgcCCGCGccGUGGGCcCGg- -3'
miRNA:   3'- -CGGCACGA---GGCGCuaCGCCUGcGCgu -5'
29429 5' -60.5 NC_006151.1 + 85759 0.68 0.584921
Target:  5'- cCCGgGCUggCCGCGcugGCgcuGGACGCGCAc -3'
miRNA:   3'- cGGCaCGA--GGCGCua-CG---CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 85610 0.67 0.648351
Target:  5'- cGCuCGUGCccaacgcgccgccgCCGCGcgGCgccagcggGGACGCGCc -3'
miRNA:   3'- -CG-GCACGa-------------GGCGCuaCG--------CCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 84620 0.69 0.530419
Target:  5'- cGCCGcGCggccgCCGCGGcgcuggacaacgccaUggccGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCaCGa----GGCGCU---------------A----CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 84356 0.69 0.526591
Target:  5'- cGCCGgcccgcgGCggugaUCGCGAUcGCGG-CGCGCGg -3'
miRNA:   3'- -CGGCa------CGa----GGCGCUA-CGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 84262 0.68 0.618565
Target:  5'- uGCgCGUGCUCgaCGUGAcGCGccugcccugcacccaGACGCGCGg -3'
miRNA:   3'- -CG-GCACGAG--GCGCUaCGC---------------CUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.