miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 25113 0.66 0.732396
Target:  5'- -gCGUGCgagcgCUG-GgcGUGGACGCGCGa -3'
miRNA:   3'- cgGCACGa----GGCgCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 50636 0.66 0.732396
Target:  5'- cGCCucgGCgacggCCGCGG-GCGGACccgagucguGCGCGg -3'
miRNA:   3'- -CGGca-CGa----GGCGCUaCGCCUG---------CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 54103 0.66 0.732396
Target:  5'- gGCCaUGUcggCUGCGAcggcggcggcUGCGGACGgGCu -3'
miRNA:   3'- -CGGcACGa--GGCGCU----------ACGCCUGCgCGu -5'
29429 5' -60.5 NC_006151.1 + 86482 0.66 0.732396
Target:  5'- cGCaCGUggcGCUCUGCGugaucggGCGG-CGCGUg -3'
miRNA:   3'- -CG-GCA---CGAGGCGCua-----CGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 4862 0.66 0.732396
Target:  5'- cCCG-GCgCCGCcGUaGCGGACGCGg- -3'
miRNA:   3'- cGGCaCGaGGCGcUA-CGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 75966 0.66 0.722833
Target:  5'- cGCuCGUGCUUCGUGAggaagaagGUGucguCGCGCAc -3'
miRNA:   3'- -CG-GCACGAGGCGCUa-------CGCcu--GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 17385 0.66 0.721872
Target:  5'- aCCGUG-UCCGCacgacggGgcGCGuGGCGCGCGg -3'
miRNA:   3'- cGGCACgAGGCG-------CuaCGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 131939 0.66 0.703495
Target:  5'- uGCCGUaGCUggCCacggGCGAggGCGGGCG-GCAg -3'
miRNA:   3'- -CGGCA-CGA--GG----CGCUa-CGCCUGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 112777 0.66 0.710292
Target:  5'- uUCGUGUa-CGUGAUggacaagcacuuucGCGGGCGCGCGu -3'
miRNA:   3'- cGGCACGagGCGCUA--------------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 59131 0.66 0.712229
Target:  5'- uGCCGgugggugGCgcCCGCGG-GCGGGuccaggccggcguCGCGCAg -3'
miRNA:   3'- -CGGCa------CGa-GGCGCUaCGCCU-------------GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 105730 0.66 0.712229
Target:  5'- cGCCGUGCgcgcgCCugaagcaGCGcgugGCGG-CGCGCc -3'
miRNA:   3'- -CGGCACGa----GG-------CGCua--CGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 28558 0.66 0.713196
Target:  5'- aGCCGUGC-CCGCGuccCGGGagccCGCAu -3'
miRNA:   3'- -CGGCACGaGGCGCuacGCCUgc--GCGU- -5'
29429 5' -60.5 NC_006151.1 + 45423 0.66 0.713196
Target:  5'- uGuuGUGggCCGgGGguucGCGGGCGuCGCAc -3'
miRNA:   3'- -CggCACgaGGCgCUa---CGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 114135 0.66 0.713196
Target:  5'- cGCCGccGCcgagCCGCGGcuCGGGCGCaGCGa -3'
miRNA:   3'- -CGGCa-CGa---GGCGCUacGCCUGCG-CGU- -5'
29429 5' -60.5 NC_006151.1 + 136594 0.66 0.713196
Target:  5'- cGCgCG-GCUCCGCGA-GCaccuGGACGC-CGu -3'
miRNA:   3'- -CG-GCaCGAGGCGCUaCG----CCUGCGcGU- -5'
29429 5' -60.5 NC_006151.1 + 101652 0.66 0.713196
Target:  5'- cGCCGUGC-CCGCGcucuacggcGUGGGCGagaCGUAc -3'
miRNA:   3'- -CGGCACGaGGCGCua-------CGCCUGC---GCGU- -5'
29429 5' -60.5 NC_006151.1 + 102680 0.66 0.713196
Target:  5'- cGCCGUGga-CGCGGgggcgcccggcGCGGGCgGCGCGg -3'
miRNA:   3'- -CGGCACgagGCGCUa----------CGCCUG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 102918 0.66 0.713196
Target:  5'- cGCUG-GCggCCGcCGAggaGCGGcuGCGCGCGc -3'
miRNA:   3'- -CGGCaCGa-GGC-GCUa--CGCC--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 106881 0.66 0.713196
Target:  5'- gGCCGUgacGCUgUGCGAccUGCGcGAcccCGCGCu -3'
miRNA:   3'- -CGGCA---CGAgGCGCU--ACGC-CU---GCGCGu -5'
29429 5' -60.5 NC_006151.1 + 138609 0.66 0.713196
Target:  5'- cGCUGccGCUCgGCGAggacgccgccGgGGGCGCGCc -3'
miRNA:   3'- -CGGCa-CGAGgCGCUa---------CgCCUGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.