miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 102680 0.66 0.713196
Target:  5'- cGCCGUGga-CGCGGgggcgcccggcGCGGGCgGCGCGg -3'
miRNA:   3'- -CGGCACgagGCGCUa----------CGCCUG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 101652 0.66 0.713196
Target:  5'- cGCCGUGC-CCGCGcucuacggcGUGGGCGagaCGUAc -3'
miRNA:   3'- -CGGCACGaGGCGCua-------CGCCUGC---GCGU- -5'
29429 5' -60.5 NC_006151.1 + 100835 0.66 0.703495
Target:  5'- cGCCGUGCcgcucUCgGCGA-GCGucaACGUGCGc -3'
miRNA:   3'- -CGGCACG-----AGgCGCUaCGCc--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 95202 0.66 0.703495
Target:  5'- gGCCGaUGC-CCaGCGA-GCGGcUGCGCc -3'
miRNA:   3'- -CGGC-ACGaGG-CGCUaCGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 64939 0.66 0.703495
Target:  5'- cGCgCGUcaGCgccuggCCGCGcUGCGGGCGCa-- -3'
miRNA:   3'- -CG-GCA--CGa-----GGCGCuACGCCUGCGcgu -5'
29429 5' -60.5 NC_006151.1 + 124772 0.66 0.703495
Target:  5'- uCCGcGcCUCCGaGA-GCGuGACGCGCAa -3'
miRNA:   3'- cGGCaC-GAGGCgCUaCGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 118053 0.66 0.703495
Target:  5'- aCCGUGCgcgCCGCGccGCuGGgcuACGUGUAc -3'
miRNA:   3'- cGGCACGa--GGCGCuaCG-CC---UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 119049 0.66 0.693737
Target:  5'- -aCGgcgGCgCCGCGGccgccuccGCGGGCGCGCc -3'
miRNA:   3'- cgGCa--CGaGGCGCUa-------CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 32780 0.66 0.693737
Target:  5'- cGCCGcGg-CCGCGGggggccgaaGCGGACGCGgAa -3'
miRNA:   3'- -CGGCaCgaGGCGCUa--------CGCCUGCGCgU- -5'
29429 5' -60.5 NC_006151.1 + 131054 0.66 0.693737
Target:  5'- gGCCGgagGCcgucuccaugCCGCGGa--GGGCGCGCGa -3'
miRNA:   3'- -CGGCa--CGa---------GGCGCUacgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 122431 0.66 0.703495
Target:  5'- cGCCGagGC-CCGgGAgGCGGAgGCgGCGu -3'
miRNA:   3'- -CGGCa-CGaGGCgCUaCGCCUgCG-CGU- -5'
29429 5' -60.5 NC_006151.1 + 121638 0.66 0.703495
Target:  5'- cCCGUGgccuCUCuCGCG--GCGGACGgGCGg -3'
miRNA:   3'- cGGCAC----GAG-GCGCuaCGCCUGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 136594 0.66 0.713196
Target:  5'- cGCgCG-GCUCCGCGA-GCaccuGGACGC-CGu -3'
miRNA:   3'- -CG-GCaCGAGGCGCUaCG----CCUGCGcGU- -5'
29429 5' -60.5 NC_006151.1 + 114135 0.66 0.713196
Target:  5'- cGCCGccGCcgagCCGCGGcuCGGGCGCaGCGa -3'
miRNA:   3'- -CGGCa-CGa---GGCGCUacGCCUGCG-CGU- -5'
29429 5' -60.5 NC_006151.1 + 45423 0.66 0.713196
Target:  5'- uGuuGUGggCCGgGGguucGCGGGCGuCGCAc -3'
miRNA:   3'- -CggCACgaGGCgCUa---CGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 28558 0.66 0.713196
Target:  5'- aGCCGUGC-CCGCGuccCGGGagccCGCAu -3'
miRNA:   3'- -CGGCACGaGGCGCuacGCCUgc--GCGU- -5'
29429 5' -60.5 NC_006151.1 + 105730 0.66 0.712229
Target:  5'- cGCCGUGCgcgcgCCugaagcaGCGcgugGCGG-CGCGCc -3'
miRNA:   3'- -CGGCACGa----GG-------CGCua--CGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 59131 0.66 0.712229
Target:  5'- uGCCGgugggugGCgcCCGCGG-GCGGGuccaggccggcguCGCGCAg -3'
miRNA:   3'- -CGGCa------CGa-GGCGCUaCGCCU-------------GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 112777 0.66 0.710292
Target:  5'- uUCGUGUa-CGUGAUggacaagcacuuucGCGGGCGCGCGu -3'
miRNA:   3'- cGGCACGagGCGCUA--------------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 131939 0.66 0.703495
Target:  5'- uGCCGUaGCUggCCacggGCGAggGCGGGCG-GCAg -3'
miRNA:   3'- -CGGCA-CGA--GG----CGCUa-CGCCUGCgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.