miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 22990 0.67 0.674084
Target:  5'- gGUCGUGaucucggCCGCGcggGUGGGgGCGCGg -3'
miRNA:   3'- -CGGCACga-----GGCGCua-CGCCUgCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 92735 0.67 0.664204
Target:  5'- gGCCaUGCUCaCGcCGgcGCGGcACGgGCAc -3'
miRNA:   3'- -CGGcACGAG-GC-GCuaCGCC-UGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 89884 0.67 0.664204
Target:  5'- cGCCGcucggGCUCgGCGGUGgGGuCG-GCGu -3'
miRNA:   3'- -CGGCa----CGAGgCGCUACgCCuGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 24597 0.67 0.664204
Target:  5'- cGCCuUGacgUCGCGAUGCauGAUGCGCAu -3'
miRNA:   3'- -CGGcACga-GGCGCUACGc-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 137269 0.67 0.664204
Target:  5'- cGCCcgGUGC-CCGCGGgcacgcucgagGCGGccAUGCGCGg -3'
miRNA:   3'- -CGG--CACGaGGCGCUa----------CGCC--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 55214 0.66 0.693737
Target:  5'- aGCCGgGCUUCGgGcaccacgGCGccGGCGCGCAg -3'
miRNA:   3'- -CGGCaCGAGGCgCua-----CGC--CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 59050 0.66 0.693737
Target:  5'- aGCCG-GCUCCag---GCGGGCagGCGCAg -3'
miRNA:   3'- -CGGCaCGAGGcgcuaCGCCUG--CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 100835 0.66 0.703495
Target:  5'- cGCCGUGCcgcucUCgGCGA-GCGucaACGUGCGc -3'
miRNA:   3'- -CGGCACG-----AGgCGCUaCGCc--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 95202 0.66 0.703495
Target:  5'- gGCCGaUGC-CCaGCGA-GCGGcUGCGCc -3'
miRNA:   3'- -CGGC-ACGaGG-CGCUaCGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 64939 0.66 0.703495
Target:  5'- cGCgCGUcaGCgccuggCCGCGcUGCGGGCGCa-- -3'
miRNA:   3'- -CG-GCA--CGa-----GGCGCuACGCCUGCGcgu -5'
29429 5' -60.5 NC_006151.1 + 124772 0.66 0.703495
Target:  5'- uCCGcGcCUCCGaGA-GCGuGACGCGCAa -3'
miRNA:   3'- cGGCaC-GAGGCgCUaCGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 118053 0.66 0.703495
Target:  5'- aCCGUGCgcgCCGCGccGCuGGgcuACGUGUAc -3'
miRNA:   3'- cGGCACGa--GGCGCuaCG-CC---UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 119049 0.66 0.693737
Target:  5'- -aCGgcgGCgCCGCGGccgccuccGCGGGCGCGCc -3'
miRNA:   3'- cgGCa--CGaGGCGCUa-------CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 32780 0.66 0.693737
Target:  5'- cGCCGcGg-CCGCGGggggccgaaGCGGACGCGgAa -3'
miRNA:   3'- -CGGCaCgaGGCGCUa--------CGCCUGCGCgU- -5'
29429 5' -60.5 NC_006151.1 + 131054 0.66 0.693737
Target:  5'- gGCCGgagGCcgucuccaugCCGCGGa--GGGCGCGCGa -3'
miRNA:   3'- -CGGCa--CGa---------GGCGCUacgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 104550 0.66 0.693737
Target:  5'- gGCCGaGCUggCCGCccugGgcGCGcGGCGCGCGg -3'
miRNA:   3'- -CGGCaCGA--GGCG----CuaCGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 103321 0.66 0.693737
Target:  5'- cGCCGaGCUgCGCacgcuGGUGCaGGCgGCGCAg -3'
miRNA:   3'- -CGGCaCGAgGCG-----CUACGcCUG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 69760 0.66 0.693737
Target:  5'- cGCCGggGC-CaCGCGccGCGcGCGCGCGu -3'
miRNA:   3'- -CGGCa-CGaG-GCGCuaCGCcUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 15919 0.66 0.693737
Target:  5'- cGCCGccGCcCCGUGAgGCGGGCcucgccccGCGCu -3'
miRNA:   3'- -CGGCa-CGaGGCGCUaCGCCUG--------CGCGu -5'
29429 5' -60.5 NC_006151.1 + 92171 0.66 0.693737
Target:  5'- gGCCGUGCgcgCCGaCGgcGaCGGggccgccgACGCGCc -3'
miRNA:   3'- -CGGCACGa--GGC-GCuaC-GCC--------UGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.