Results 81 - 100 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29429 | 5' | -60.5 | NC_006151.1 | + | 15919 | 0.66 | 0.693737 |
Target: 5'- cGCCGccGCcCCGUGAgGCGGGCcucgccccGCGCu -3' miRNA: 3'- -CGGCa-CGaGGCGCUaCGCCUG--------CGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 92171 | 0.66 | 0.693737 |
Target: 5'- gGCCGUGCgcgCCGaCGgcGaCGGggccgccgACGCGCc -3' miRNA: 3'- -CGGCACGa--GGC-GCuaC-GCC--------UGCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 59050 | 0.66 | 0.693737 |
Target: 5'- aGCCG-GCUCCag---GCGGGCagGCGCAg -3' miRNA: 3'- -CGGCaCGAGGcgcuaCGCCUG--CGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 55214 | 0.66 | 0.693737 |
Target: 5'- aGCCGgGCUUCGgGcaccacgGCGccGGCGCGCAg -3' miRNA: 3'- -CGGCaCGAGGCgCua-----CGC--CUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 129580 | 0.66 | 0.683931 |
Target: 5'- cGUCGcGCugcucccagaacUCCGCGA-GCGGGCacguGCGCAc -3' miRNA: 3'- -CGGCaCG------------AGGCGCUaCGCCUG----CGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 113224 | 0.66 | 0.683931 |
Target: 5'- cGCCG-GCaCCGCGccGUGGACGaGUAc -3' miRNA: 3'- -CGGCaCGaGGCGCuaCGCCUGCgCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 130298 | 0.66 | 0.683931 |
Target: 5'- nGCCGg---CCGaCGgcGCGGAgCGCGCGc -3' miRNA: 3'- -CGGCacgaGGC-GCuaCGCCU-GCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 131054 | 0.66 | 0.693737 |
Target: 5'- gGCCGgagGCcgucuccaugCCGCGGa--GGGCGCGCGa -3' miRNA: 3'- -CGGCa--CGa---------GGCGCUacgCCUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 32780 | 0.66 | 0.693737 |
Target: 5'- cGCCGcGg-CCGCGGggggccgaaGCGGACGCGgAa -3' miRNA: 3'- -CGGCaCgaGGCGCUa--------CGCCUGCGCgU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 119049 | 0.66 | 0.693737 |
Target: 5'- -aCGgcgGCgCCGCGGccgccuccGCGGGCGCGCc -3' miRNA: 3'- cgGCa--CGaGGCGCUa-------CGCCUGCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 59131 | 0.66 | 0.712229 |
Target: 5'- uGCCGgugggugGCgcCCGCGG-GCGGGuccaggccggcguCGCGCAg -3' miRNA: 3'- -CGGCa------CGa-GGCGCUaCGCCU-------------GCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 112777 | 0.66 | 0.710292 |
Target: 5'- uUCGUGUa-CGUGAUggacaagcacuuucGCGGGCGCGCGu -3' miRNA: 3'- cGGCACGagGCGCUA--------------CGCCUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 131939 | 0.66 | 0.703495 |
Target: 5'- uGCCGUaGCUggCCacggGCGAggGCGGGCG-GCAg -3' miRNA: 3'- -CGGCA-CGA--GG----CGCUa-CGCCUGCgCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 121638 | 0.66 | 0.703495 |
Target: 5'- cCCGUGgccuCUCuCGCG--GCGGACGgGCGg -3' miRNA: 3'- cGGCAC----GAG-GCGCuaCGCCUGCgCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 122431 | 0.66 | 0.703495 |
Target: 5'- cGCCGagGC-CCGgGAgGCGGAgGCgGCGu -3' miRNA: 3'- -CGGCa-CGaGGCgCUaCGCCUgCG-CGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 100835 | 0.66 | 0.703495 |
Target: 5'- cGCCGUGCcgcucUCgGCGA-GCGucaACGUGCGc -3' miRNA: 3'- -CGGCACG-----AGgCGCUaCGCc--UGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 95202 | 0.66 | 0.703495 |
Target: 5'- gGCCGaUGC-CCaGCGA-GCGGcUGCGCc -3' miRNA: 3'- -CGGC-ACGaGG-CGCUaCGCCuGCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 64939 | 0.66 | 0.703495 |
Target: 5'- cGCgCGUcaGCgccuggCCGCGcUGCGGGCGCa-- -3' miRNA: 3'- -CG-GCA--CGa-----GGCGCuACGCCUGCGcgu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 124772 | 0.66 | 0.703495 |
Target: 5'- uCCGcGcCUCCGaGA-GCGuGACGCGCAa -3' miRNA: 3'- cGGCaC-GAGGCgCUaCGC-CUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 118053 | 0.66 | 0.703495 |
Target: 5'- aCCGUGCgcgCCGCGccGCuGGgcuACGUGUAc -3' miRNA: 3'- cGGCACGa--GGCGCuaCG-CC---UGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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