miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29431 3' -57.4 NC_006151.1 + 29623 0.66 0.869406
Target:  5'- uGUGGGaggaGUGggGGAauUGGGGGUGGGg -3'
miRNA:   3'- -CACCUg---CACagCCUguACCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 20617 0.66 0.86198
Target:  5'- --cGGCGUGg-GGugGUGGGGGCGc- -3'
miRNA:   3'- cacCUGCACagCCugUACCUCCGCcu -5'
29431 3' -57.4 NC_006151.1 + 15576 0.66 0.86198
Target:  5'- -cGGACGUGUacgaggaGGACGacGAGGCcgaGGAc -3'
miRNA:   3'- caCCUGCACAg------CCUGUacCUCCG---CCU- -5'
29431 3' -57.4 NC_006151.1 + 84038 0.66 0.86198
Target:  5'- cGUGuGCGUGgugCGG-C-UGGGGGUGGGg -3'
miRNA:   3'- -CACcUGCACa--GCCuGuACCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 5046 0.66 0.86198
Target:  5'- -aGGccGCGg--CGGAgGaGGAGGCGGAg -3'
miRNA:   3'- caCC--UGCacaGCCUgUaCCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 66904 0.66 0.858953
Target:  5'- -aGGACGccgccgaggaGGGCcacgAUGGAGGCGGGg -3'
miRNA:   3'- caCCUGCacag------CCUG----UACCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 121657 0.66 0.854351
Target:  5'- -cGGACGgg-CGGGC--GGAGGgGGGg -3'
miRNA:   3'- caCCUGCacaGCCUGuaCCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 64488 0.66 0.854351
Target:  5'- -gGGACGcccgCGGGCGcGGGcGGCGGGc -3'
miRNA:   3'- caCCUGCaca-GCCUGUaCCU-CCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 29273 0.66 0.846525
Target:  5'- -gGGACGggugaGUCGGGaggGUGG-GGUGGGa -3'
miRNA:   3'- caCCUGCa----CAGCCUg--UACCuCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 45390 0.66 0.838508
Target:  5'- -gGGACGaUGaUGGugGUGGuGGUGGu -3'
miRNA:   3'- caCCUGC-ACaGCCugUACCuCCGCCu -5'
29431 3' -57.4 NC_006151.1 + 112055 0.66 0.830306
Target:  5'- -cGGGCGgcggCGGugGUGGuggggcuGGUGGAg -3'
miRNA:   3'- caCCUGCaca-GCCugUACCu------CCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 103876 0.66 0.829476
Target:  5'- -gGGACGcugGUCGaGGCGcgccaccuggcgcUGGAGGUGGc -3'
miRNA:   3'- caCCUGCa--CAGC-CUGU-------------ACCUCCGCCu -5'
29431 3' -57.4 NC_006151.1 + 101691 0.67 0.821929
Target:  5'- cGUGGACGaGcCGuACGUGGAgcgGGCGGu -3'
miRNA:   3'- -CACCUGCaCaGCcUGUACCU---CCGCCu -5'
29431 3' -57.4 NC_006151.1 + 44843 0.67 0.821929
Target:  5'- -gGGGCGag-CGGGguCGUGGAGGgGGGg -3'
miRNA:   3'- caCCUGCacaGCCU--GUACCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 29318 0.67 0.820233
Target:  5'- uGUGGGCGUGggaaaacaccggCGGGagagaggGGGGGgGGAg -3'
miRNA:   3'- -CACCUGCACa-----------GCCUgua----CCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 27515 0.67 0.813382
Target:  5'- -aGGGgGUGcgauggGGGCGUGGGGGgGGGg -3'
miRNA:   3'- caCCUgCACag----CCUGUACCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 33391 0.67 0.813382
Target:  5'- -cGGGCGga--GGACA--GAGGCGGAg -3'
miRNA:   3'- caCCUGCacagCCUGUacCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 18169 0.67 0.804674
Target:  5'- -cGGGCaUGUCGGA-AUGcGGGCGGGc -3'
miRNA:   3'- caCCUGcACAGCCUgUACcUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 44469 0.67 0.804674
Target:  5'- -gGGGgGUGagggUGGACGggGGGGGUGGGg -3'
miRNA:   3'- caCCUgCACa---GCCUGUa-CCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 22525 0.67 0.804674
Target:  5'- -cGGGgGaGUCGGGCGgggccgGGucAGGCGGAg -3'
miRNA:   3'- caCCUgCaCAGCCUGUa-----CC--UCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.