miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29431 3' -57.4 NC_006151.1 + 5473 0.67 0.786806
Target:  5'- gGUGGugGaGUUGGAguUGGAGuuGGGg -3'
miRNA:   3'- -CACCugCaCAGCCUguACCUCcgCCU- -5'
29431 3' -57.4 NC_006151.1 + 87855 0.67 0.786806
Target:  5'- -cGGACucgcUGUCGuuuauugauucGACGUGGGGGgGGAa -3'
miRNA:   3'- caCCUGc---ACAGC-----------CUGUACCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 27439 0.68 0.759004
Target:  5'- aUGGGCGcGgCGGACGcggugggucGGGGGCGGGc -3'
miRNA:   3'- cACCUGCaCaGCCUGUa--------CCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 34351 0.68 0.759004
Target:  5'- -gGGGCGUGUCucGugGggugGGAGGgGGGa -3'
miRNA:   3'- caCCUGCACAGc-CugUa---CCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 49488 0.68 0.753318
Target:  5'- cGUGGACugaGUCGGGCGUGcgcgcacaccgccGGCGGAg -3'
miRNA:   3'- -CACCUGca-CAGCCUGUACcu-----------CCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 89167 0.68 0.749505
Target:  5'- -cGGGCGaggcgGgcgCGGGgGUcGGGGGCGGAg -3'
miRNA:   3'- caCCUGCa----Ca--GCCUgUA-CCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 51053 0.68 0.739905
Target:  5'- -cGGugGUGgcgaUGGugAUGGcGGCGGc -3'
miRNA:   3'- caCCugCACa---GCCugUACCuCCGCCu -5'
29431 3' -57.4 NC_006151.1 + 41184 0.68 0.730212
Target:  5'- -cGGugGUcGagGGGgGUGGGGGgGGAa -3'
miRNA:   3'- caCCugCA-CagCCUgUACCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 11795 0.68 0.730212
Target:  5'- cGUGGGCGaGagGGGCGggguggggugGGGGGCGGc -3'
miRNA:   3'- -CACCUGCaCagCCUGUa---------CCUCCGCCu -5'
29431 3' -57.4 NC_006151.1 + 23414 0.69 0.700672
Target:  5'- cUGGugGUcGcCGGcCGUGGGGGCGa- -3'
miRNA:   3'- cACCugCA-CaGCCuGUACCUCCGCcu -5'
29431 3' -57.4 NC_006151.1 + 33084 0.69 0.700672
Target:  5'- -gGGGCGaGggCGGGCgGUGGAGGgGGGa -3'
miRNA:   3'- caCCUGCaCa-GCCUG-UACCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 103994 0.69 0.700672
Target:  5'- -cGGcCGUGgCGGcCGUGGAGGCGc- -3'
miRNA:   3'- caCCuGCACaGCCuGUACCUCCGCcu -5'
29431 3' -57.4 NC_006151.1 + 121310 0.69 0.700672
Target:  5'- -cGGGCGc--UGGAgCGUGGAGGCGGc -3'
miRNA:   3'- caCCUGCacaGCCU-GUACCUCCGCCu -5'
29431 3' -57.4 NC_006151.1 + 41342 0.69 0.699677
Target:  5'- gGUGGugGUGguccCGGGuggucguCGUGGAGG-GGAg -3'
miRNA:   3'- -CACCugCACa---GCCU-------GUACCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 14488 0.69 0.6907
Target:  5'- gGUGGGCGgggGUCGGGag-GGAucGGgGGAa -3'
miRNA:   3'- -CACCUGCa--CAGCCUguaCCU--CCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 96899 0.69 0.670622
Target:  5'- -gGGAUGUGUCuGGGC---GGGGCGGGa -3'
miRNA:   3'- caCCUGCACAG-CCUGuacCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 40543 0.7 0.620032
Target:  5'- -cGGAgGUGgcggCGGugGUGGAagcGGCGGc -3'
miRNA:   3'- caCCUgCACa---GCCugUACCU---CCGCCu -5'
29431 3' -57.4 NC_006151.1 + 90756 0.7 0.60991
Target:  5'- -gGGGCGg--CGGGCAcGGuGGCGGGg -3'
miRNA:   3'- caCCUGCacaGCCUGUaCCuCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 8084 0.71 0.579671
Target:  5'- -gGGGCGUGgcgGGGCGUGGcagAGGgGGAg -3'
miRNA:   3'- caCCUGCACag-CCUGUACC---UCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 45095 0.71 0.553725
Target:  5'- gGUGuGGCGUcgauggggucgugccGUgGGACG-GGAGGCGGAa -3'
miRNA:   3'- -CAC-CUGCA---------------CAgCCUGUaCCUCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.