miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29431 3' -57.4 NC_006151.1 + 5046 0.66 0.86198
Target:  5'- -aGGccGCGg--CGGAgGaGGAGGCGGAg -3'
miRNA:   3'- caCC--UGCacaGCCUgUaCCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 5473 0.67 0.786806
Target:  5'- gGUGGugGaGUUGGAguUGGAGuuGGGg -3'
miRNA:   3'- -CACCugCaCAGCCUguACCUCcgCCU- -5'
29431 3' -57.4 NC_006151.1 + 8084 0.71 0.579671
Target:  5'- -gGGGCGUGgcgGGGCGUGGcagAGGgGGAg -3'
miRNA:   3'- caCCUGCACag-CCUGUACC---UCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 8477 0.75 0.345253
Target:  5'- -cGGAUGgucgGUCGGACggGGcGGGCGGGg -3'
miRNA:   3'- caCCUGCa---CAGCCUGuaCC-UCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 11795 0.68 0.730212
Target:  5'- cGUGGGCGaGagGGGCGggguggggugGGGGGCGGc -3'
miRNA:   3'- -CACCUGCaCagCCUGUa---------CCUCCGCCu -5'
29431 3' -57.4 NC_006151.1 + 14488 0.69 0.6907
Target:  5'- gGUGGGCGgggGUCGGGag-GGAucGGgGGAa -3'
miRNA:   3'- -CACCUGCa--CAGCCUguaCCU--CCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 15576 0.66 0.86198
Target:  5'- -cGGACGUGUacgaggaGGACGacGAGGCcgaGGAc -3'
miRNA:   3'- caCCUGCACAg------CCUGUacCUCCG---CCU- -5'
29431 3' -57.4 NC_006151.1 + 18169 0.67 0.804674
Target:  5'- -cGGGCaUGUCGGA-AUGcGGGCGGGc -3'
miRNA:   3'- caCCUGcACAGCCUgUACcUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 20617 0.66 0.86198
Target:  5'- --cGGCGUGg-GGugGUGGGGGCGc- -3'
miRNA:   3'- cacCUGCACagCCugUACCUCCGCcu -5'
29431 3' -57.4 NC_006151.1 + 22525 0.67 0.804674
Target:  5'- -cGGGgGaGUCGGGCGgggccgGGucAGGCGGAg -3'
miRNA:   3'- caCCUgCaCAGCCUGUa-----CC--UCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 23015 0.73 0.463546
Target:  5'- -gGGGCGcGggGGugGUGGAGGCGGc -3'
miRNA:   3'- caCCUGCaCagCCugUACCUCCGCCu -5'
29431 3' -57.4 NC_006151.1 + 23414 0.69 0.700672
Target:  5'- cUGGugGUcGcCGGcCGUGGGGGCGa- -3'
miRNA:   3'- cACCugCA-CaGCCuGUACCUCCGCcu -5'
29431 3' -57.4 NC_006151.1 + 27439 0.68 0.759004
Target:  5'- aUGGGCGcGgCGGACGcggugggucGGGGGCGGGc -3'
miRNA:   3'- cACCUGCaCaGCCUGUa--------CCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 27515 0.67 0.813382
Target:  5'- -aGGGgGUGcgauggGGGCGUGGGGGgGGGg -3'
miRNA:   3'- caCCUgCACag----CCUGUACCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 29273 0.66 0.846525
Target:  5'- -gGGACGggugaGUCGGGaggGUGG-GGUGGGa -3'
miRNA:   3'- caCCUGCa----CAGCCUg--UACCuCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 29318 0.67 0.820233
Target:  5'- uGUGGGCGUGggaaaacaccggCGGGagagaggGGGGGgGGAg -3'
miRNA:   3'- -CACCUGCACa-----------GCCUgua----CCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 29623 0.66 0.869406
Target:  5'- uGUGGGaggaGUGggGGAauUGGGGGUGGGg -3'
miRNA:   3'- -CACCUg---CACagCCUguACCUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 33084 0.69 0.700672
Target:  5'- -gGGGCGaGggCGGGCgGUGGAGGgGGGa -3'
miRNA:   3'- caCCUGCaCa-GCCUG-UACCUCCgCCU- -5'
29431 3' -57.4 NC_006151.1 + 33135 0.76 0.322888
Target:  5'- -cGGGCcgaGUGUCGGGCgaGUGcGAGGCGGGu -3'
miRNA:   3'- caCCUG---CACAGCCUG--UAC-CUCCGCCU- -5'
29431 3' -57.4 NC_006151.1 + 33391 0.67 0.813382
Target:  5'- -cGGGCGga--GGACA--GAGGCGGAg -3'
miRNA:   3'- caCCUGCacagCCUGUacCUCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.