miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29431 5' -53 NC_006151.1 + 64717 0.66 0.979879
Target:  5'- cCGCCAuCCUC-GCCGCagaACCGGgcCACGa -3'
miRNA:   3'- -GCGGUuGGAGaUGGUG---UGGUU--GUGCc -5'
29431 5' -53 NC_006151.1 + 35960 0.66 0.979879
Target:  5'- aGCCAGCUcCUGgCGgcCGCCGcCGCGGc -3'
miRNA:   3'- gCGGUUGGaGAUgGU--GUGGUuGUGCC- -5'
29431 5' -53 NC_006151.1 + 59429 0.66 0.979879
Target:  5'- gCGCCAGCUcggcgUCgGCCGcCGCCGcCGCGa -3'
miRNA:   3'- -GCGGUUGG-----AGaUGGU-GUGGUuGUGCc -5'
29431 5' -53 NC_006151.1 + 62475 0.66 0.979879
Target:  5'- gGgCAGCCgguuCUACGCCAACGUGGa -3'
miRNA:   3'- gCgGUUGGagauGGUGUGGUUGUGCC- -5'
29431 5' -53 NC_006151.1 + 64059 0.66 0.979879
Target:  5'- aGCgaGGCCcCgACCAUGCCGguGCGCGGg -3'
miRNA:   3'- gCGg-UUGGaGaUGGUGUGGU--UGUGCC- -5'
29431 5' -53 NC_006151.1 + 113937 0.66 0.979879
Target:  5'- uCGCUAcgcGCC-CUACUuuGCCuACGCGGc -3'
miRNA:   3'- -GCGGU---UGGaGAUGGugUGGuUGUGCC- -5'
29431 5' -53 NC_006151.1 + 128563 0.66 0.979879
Target:  5'- uGCCGcccaaagagcGCCUCggGCgACAUCGucucGCGCGGc -3'
miRNA:   3'- gCGGU----------UGGAGa-UGgUGUGGU----UGUGCC- -5'
29431 5' -53 NC_006151.1 + 7276 0.66 0.979879
Target:  5'- gGCCGcCCUCgGCCAaugggGCCu-CACGGu -3'
miRNA:   3'- gCGGUuGGAGaUGGUg----UGGuuGUGCC- -5'
29431 5' -53 NC_006151.1 + 11316 0.66 0.979879
Target:  5'- gGCC-GCCgcgaUACCGCGCgGgcgauaccGCGCGGg -3'
miRNA:   3'- gCGGuUGGag--AUGGUGUGgU--------UGUGCC- -5'
29431 5' -53 NC_006151.1 + 50670 0.66 0.979879
Target:  5'- uGCgCGGCCgcacccCCGCGCCGcCGCGGc -3'
miRNA:   3'- gCG-GUUGGagau--GGUGUGGUuGUGCC- -5'
29431 5' -53 NC_006151.1 + 137826 0.66 0.979879
Target:  5'- gGCCcguACCUCcaggACUuCACCuucgugGACACGGg -3'
miRNA:   3'- gCGGu--UGGAGa---UGGuGUGG------UUGUGCC- -5'
29431 5' -53 NC_006151.1 + 17486 0.66 0.979656
Target:  5'- uCGUCGgcggcgcGCCgCUGCUGCACCAGCgACGc -3'
miRNA:   3'- -GCGGU-------UGGaGAUGGUGUGGUUG-UGCc -5'
29431 5' -53 NC_006151.1 + 122639 0.66 0.978977
Target:  5'- aCGCaCAACCUggacgacCUggagcggcgcgagcGCCGCGCCGaggugcGCGCGGc -3'
miRNA:   3'- -GCG-GUUGGA-------GA--------------UGGUGUGGU------UGUGCC- -5'
29431 5' -53 NC_006151.1 + 42561 0.66 0.977567
Target:  5'- cCGCCAccccCCUCUcCgGCGCCA-CGCGc -3'
miRNA:   3'- -GCGGUu---GGAGAuGgUGUGGUuGUGCc -5'
29431 5' -53 NC_006151.1 + 77198 0.66 0.977567
Target:  5'- cCGCCGcguCCUCcauccCCGCGCCGcCGCGu -3'
miRNA:   3'- -GCGGUu--GGAGau---GGUGUGGUuGUGCc -5'
29431 5' -53 NC_006151.1 + 85938 0.66 0.977567
Target:  5'- gGCCugcuGCUgcagCaGCCGCACCugcgcAACGCGGc -3'
miRNA:   3'- gCGGu---UGGa---GaUGGUGUGG-----UUGUGCC- -5'
29431 5' -53 NC_006151.1 + 104309 0.66 0.977567
Target:  5'- gGCUGACguggCUCgacgACUACGCCGuCGCGGc -3'
miRNA:   3'- gCGGUUG----GAGa---UGGUGUGGUuGUGCC- -5'
29431 5' -53 NC_006151.1 + 105085 0.66 0.977567
Target:  5'- uGCaGGCCgUCgagugGCUGCACCAgGCGCGGc -3'
miRNA:   3'- gCGgUUGG-AGa----UGGUGUGGU-UGUGCC- -5'
29431 5' -53 NC_006151.1 + 121965 0.66 0.977567
Target:  5'- aCGCCGagGCCUaCUuugAgCGCACCAugGgCGGc -3'
miRNA:   3'- -GCGGU--UGGA-GA---UgGUGUGGUugU-GCC- -5'
29431 5' -53 NC_006151.1 + 37324 0.66 0.977567
Target:  5'- cCGCCGACCgacgggccgCUGCuCAC-CCcGCuCGGg -3'
miRNA:   3'- -GCGGUUGGa--------GAUG-GUGuGGuUGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.