miRNA display CGI


Results 21 - 40 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29431 5' -53 NC_006151.1 + 104309 0.66 0.977567
Target:  5'- gGCUGACguggCUCgacgACUACGCCGuCGCGGc -3'
miRNA:   3'- gCGGUUG----GAGa---UGGUGUGGUuGUGCC- -5'
29431 5' -53 NC_006151.1 + 105085 0.66 0.977567
Target:  5'- uGCaGGCCgUCgagugGCUGCACCAgGCGCGGc -3'
miRNA:   3'- gCGgUUGG-AGa----UGGUGUGGU-UGUGCC- -5'
29431 5' -53 NC_006151.1 + 121965 0.66 0.977567
Target:  5'- aCGCCGagGCCUaCUuugAgCGCACCAugGgCGGc -3'
miRNA:   3'- -GCGGU--UGGA-GA---UgGUGUGGUugU-GCC- -5'
29431 5' -53 NC_006151.1 + 68418 0.66 0.977567
Target:  5'- cCGCCccCCUC-GCCcCGCUAcACGCGGc -3'
miRNA:   3'- -GCGGuuGGAGaUGGuGUGGU-UGUGCC- -5'
29431 5' -53 NC_006151.1 + 65977 0.66 0.977326
Target:  5'- aGCCGGuCCUCgccgGCCGCGagcgcguCCucCGCGGc -3'
miRNA:   3'- gCGGUU-GGAGa---UGGUGU-------GGuuGUGCC- -5'
29431 5' -53 NC_006151.1 + 95997 0.66 0.977326
Target:  5'- gGCC-ACCUCguccgugaugGCgCGCACCGccuccucggugguGCGCGGc -3'
miRNA:   3'- gCGGuUGGAGa---------UG-GUGUGGU-------------UGUGCC- -5'
29431 5' -53 NC_006151.1 + 60168 0.66 0.975066
Target:  5'- gGCCAGCCcgaGCC-CACgacgugguucagCAGCACGGg -3'
miRNA:   3'- gCGGUUGGagaUGGuGUG------------GUUGUGCC- -5'
29431 5' -53 NC_006151.1 + 81943 0.66 0.975066
Target:  5'- gGCCAcGCCga-GgCGCACCGccGCGCGGu -3'
miRNA:   3'- gCGGU-UGGagaUgGUGUGGU--UGUGCC- -5'
29431 5' -53 NC_006151.1 + 117765 0.66 0.975066
Target:  5'- gCGCCGGCCgagguauaggCUccgggcggggcGCCACGCCcGGCgggGCGGg -3'
miRNA:   3'- -GCGGUUGGa---------GA-----------UGGUGUGG-UUG---UGCC- -5'
29431 5' -53 NC_006151.1 + 13685 0.66 0.975066
Target:  5'- gCGCCGGCCaaugcgggCUcCCgggACGCgGGCACGGc -3'
miRNA:   3'- -GCGGUUGGa-------GAuGG---UGUGgUUGUGCC- -5'
29431 5' -53 NC_006151.1 + 61340 0.66 0.975066
Target:  5'- gGCCAGCggCUG-CGCACCAcgGC-CGGg -3'
miRNA:   3'- gCGGUUGgaGAUgGUGUGGU--UGuGCC- -5'
29431 5' -53 NC_006151.1 + 67960 0.66 0.975066
Target:  5'- gCGCCGgggGCCaggACCACGCaguCGCGGc -3'
miRNA:   3'- -GCGGU---UGGagaUGGUGUGguuGUGCC- -5'
29431 5' -53 NC_006151.1 + 72224 0.66 0.975066
Target:  5'- gGcCCGugUUCUGCaGCACCAGCgacugcccGCGGc -3'
miRNA:   3'- gC-GGUugGAGAUGgUGUGGUUG--------UGCC- -5'
29431 5' -53 NC_006151.1 + 106326 0.66 0.975066
Target:  5'- aCGCgGugCUggACCGCGCgCugGACGCGGu -3'
miRNA:   3'- -GCGgUugGAgaUGGUGUG-G--UUGUGCC- -5'
29431 5' -53 NC_006151.1 + 123558 0.66 0.975066
Target:  5'- cCG-CGGCUUCUACCGCuuCCAG-ACGGc -3'
miRNA:   3'- -GCgGUUGGAGAUGGUGu-GGUUgUGCC- -5'
29431 5' -53 NC_006151.1 + 136962 0.66 0.975066
Target:  5'- gCGCC-GCCUgCUggagcuggccGCCGCGCCgGGCgGCGGg -3'
miRNA:   3'- -GCGGuUGGA-GA----------UGGUGUGG-UUG-UGCC- -5'
29431 5' -53 NC_006151.1 + 96341 0.66 0.975066
Target:  5'- gCGCCGgguagGCCUCccGCCAgaACCAGCGgaGGg -3'
miRNA:   3'- -GCGGU-----UGGAGa-UGGUg-UGGUUGUg-CC- -5'
29431 5' -53 NC_006151.1 + 107594 0.66 0.975066
Target:  5'- cCGCCAAgCUg-GCCcCGCCGGCGCc- -3'
miRNA:   3'- -GCGGUUgGAgaUGGuGUGGUUGUGcc -5'
29431 5' -53 NC_006151.1 + 136468 0.66 0.972367
Target:  5'- gCGC--GCCg--ACCGCGCCGAgAUGGg -3'
miRNA:   3'- -GCGguUGGagaUGGUGUGGUUgUGCC- -5'
29431 5' -53 NC_006151.1 + 107551 0.66 0.972367
Target:  5'- cCGCCGgcGCCgCcGCC-CGCCAAgccCGCGGa -3'
miRNA:   3'- -GCGGU--UGGaGaUGGuGUGGUU---GUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.