miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29431 5' -53 NC_006151.1 + 645 0.7 0.870012
Target:  5'- aCGCCGGCUUCcggGgCGCGgCCGGgGCGGg -3'
miRNA:   3'- -GCGGUUGGAGa--UgGUGU-GGUUgUGCC- -5'
29431 5' -53 NC_006151.1 + 695 0.66 0.966349
Target:  5'- gCGCCGAgC-CUGCCccuuccgucGCACCGGgggucCGCGGg -3'
miRNA:   3'- -GCGGUUgGaGAUGG---------UGUGGUU-----GUGCC- -5'
29431 5' -53 NC_006151.1 + 1724 0.67 0.964376
Target:  5'- cCGCCGccACCUCcGCCGCcgccgcagccaccuCCGGC-CGGg -3'
miRNA:   3'- -GCGGU--UGGAGaUGGUGu-------------GGUUGuGCC- -5'
29431 5' -53 NC_006151.1 + 2112 0.66 0.972367
Target:  5'- gGCCGcgggGCCg--GCCGuCGCCGcCGCGGa -3'
miRNA:   3'- gCGGU----UGGagaUGGU-GUGGUuGUGCC- -5'
29431 5' -53 NC_006151.1 + 2915 0.67 0.955677
Target:  5'- aGCCGgcGCCgc-GCCGCGCCGAgcCGCGa -3'
miRNA:   3'- gCGGU--UGGagaUGGUGUGGUU--GUGCc -5'
29431 5' -53 NC_006151.1 + 3221 0.73 0.717058
Target:  5'- gGUCGGCUaUCUGCCGCAuCCAggcgGCGCGGc -3'
miRNA:   3'- gCGGUUGG-AGAUGGUGU-GGU----UGUGCC- -5'
29431 5' -53 NC_006151.1 + 3321 0.67 0.951245
Target:  5'- gCGCCAgaguucggggaagACCUCcugguCCACGagGGCGCGGg -3'
miRNA:   3'- -GCGGU-------------UGGAGau---GGUGUggUUGUGCC- -5'
29431 5' -53 NC_006151.1 + 3393 0.67 0.95835
Target:  5'- gGCC-GCCUCggaggGCCGCggcgugugggucucGCCGGC-CGGg -3'
miRNA:   3'- gCGGuUGGAGa----UGGUG--------------UGGUUGuGCC- -5'
29431 5' -53 NC_006151.1 + 3874 0.7 0.884542
Target:  5'- gCGCCcGCCgCcGCCgGCGCCGGCGCuGGg -3'
miRNA:   3'- -GCGGuUGGaGaUGG-UGUGGUUGUG-CC- -5'
29431 5' -53 NC_006151.1 + 3988 0.71 0.821355
Target:  5'- aGCCGGCCgcgGCCACGuuGGC-CGGg -3'
miRNA:   3'- gCGGUUGGagaUGGUGUggUUGuGCC- -5'
29431 5' -53 NC_006151.1 + 5754 0.69 0.9046
Target:  5'- cCGCCGGCCcggGCU-CACCGAC-CGGg -3'
miRNA:   3'- -GCGGUUGGagaUGGuGUGGUUGuGCC- -5'
29431 5' -53 NC_006151.1 + 5887 0.74 0.665891
Target:  5'- gGCCccGGCCUCUGCCGCugCGaguGCugcCGGg -3'
miRNA:   3'- gCGG--UUGGAGAUGGUGugGU---UGu--GCC- -5'
29431 5' -53 NC_006151.1 + 7276 0.66 0.979879
Target:  5'- gGCCGcCCUCgGCCAaugggGCCu-CACGGu -3'
miRNA:   3'- gCGGUuGGAGaUGGUg----UGGuuGUGCC- -5'
29431 5' -53 NC_006151.1 + 8333 0.77 0.52209
Target:  5'- gCGCgGGCCUCgAUCGCGCCcgccgGACGCGGa -3'
miRNA:   3'- -GCGgUUGGAGaUGGUGUGG-----UUGUGCC- -5'
29431 5' -53 NC_006151.1 + 10503 0.68 0.927966
Target:  5'- gCGCCcGCC---GCCGCAggcgcguccCCGGCGCGGg -3'
miRNA:   3'- -GCGGuUGGagaUGGUGU---------GGUUGUGCC- -5'
29431 5' -53 NC_006151.1 + 11041 0.68 0.933193
Target:  5'- gGCCGGCCggggGCCcgGCCugGACGCGGg -3'
miRNA:   3'- gCGGUUGGaga-UGGugUGG--UUGUGCC- -5'
29431 5' -53 NC_006151.1 + 11316 0.66 0.979879
Target:  5'- gGCC-GCCgcgaUACCGCGCgGgcgauaccGCGCGGg -3'
miRNA:   3'- gCGGuUGGag--AUGGUGUGgU--------UGUGCC- -5'
29431 5' -53 NC_006151.1 + 12443 0.67 0.959461
Target:  5'- cCGCCAccgcCCUCUACCAcCACCAc----- -3'
miRNA:   3'- -GCGGUu---GGAGAUGGU-GUGGUugugcc -5'
29431 5' -53 NC_006151.1 + 12834 0.71 0.838365
Target:  5'- cCGCCccCCgcgGCCACACCGagccuucuccGCGCGGu -3'
miRNA:   3'- -GCGGuuGGagaUGGUGUGGU----------UGUGCC- -5'
29431 5' -53 NC_006151.1 + 13472 0.68 0.933193
Target:  5'- cCGCgGGCCgg-ACCGCcccGCCGACuCGGg -3'
miRNA:   3'- -GCGgUUGGagaUGGUG---UGGUUGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.