miRNA display CGI


Results 1 - 20 of 511 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29432 3' -59 NC_006151.1 + 50817 0.66 0.80593
Target:  5'- cGCAGCGU--CCACGccuCgGCCCGCgccGCc -3'
miRNA:   3'- -UGUUGCGcuGGUGCu--GgCGGGCGa--CG- -5'
29432 3' -59 NC_006151.1 + 20752 0.66 0.80593
Target:  5'- cCGGCGCGccuccACCGCGGCggaCGCgCGCcggGCg -3'
miRNA:   3'- uGUUGCGC-----UGGUGCUG---GCGgGCGa--CG- -5'
29432 3' -59 NC_006151.1 + 11689 0.66 0.80593
Target:  5'- cCGACGgGGCCGCggGACgGCgCGUgcgGCg -3'
miRNA:   3'- uGUUGCgCUGGUG--CUGgCGgGCGa--CG- -5'
29432 3' -59 NC_006151.1 + 4043 0.66 0.80593
Target:  5'- gGCcuCGCGGgCGCGGgccCCGuCCaCGCUGUa -3'
miRNA:   3'- -UGuuGCGCUgGUGCU---GGC-GG-GCGACG- -5'
29432 3' -59 NC_006151.1 + 138385 0.66 0.80593
Target:  5'- uCGACGC--CCACGACCGgcuguguauCUCGCUGa -3'
miRNA:   3'- uGUUGCGcuGGUGCUGGC---------GGGCGACg -5'
29432 3' -59 NC_006151.1 + 136623 0.66 0.80593
Target:  5'- uCAACGUcacgGACCccGCGG-CGCCCGUgggGCg -3'
miRNA:   3'- uGUUGCG----CUGG--UGCUgGCGGGCGa--CG- -5'
29432 3' -59 NC_006151.1 + 99214 0.66 0.80593
Target:  5'- gGCggUGCaGGCCAgcGCCuCgCCGCUGCa -3'
miRNA:   3'- -UGuuGCG-CUGGUgcUGGcG-GGCGACG- -5'
29432 3' -59 NC_006151.1 + 94696 0.66 0.80593
Target:  5'- ---cCGCGGCCACGgaccACUGCgCGC-GCu -3'
miRNA:   3'- uguuGCGCUGGUGC----UGGCGgGCGaCG- -5'
29432 3' -59 NC_006151.1 + 65037 0.66 0.80593
Target:  5'- uACGGCagggggcccgGCGGCgGCGGgCGCCCGUUa- -3'
miRNA:   3'- -UGUUG----------CGCUGgUGCUgGCGGGCGAcg -5'
29432 3' -59 NC_006151.1 + 60416 0.66 0.80593
Target:  5'- cACGGCccaGCGGcCCACGuCCucggggGgCCGCUGCg -3'
miRNA:   3'- -UGUUG---CGCU-GGUGCuGG------CgGGCGACG- -5'
29432 3' -59 NC_006151.1 + 69994 0.66 0.80593
Target:  5'- gGCAGCGUcAgCACGcucucgacGgCGCCCGuCUGCa -3'
miRNA:   3'- -UGUUGCGcUgGUGC--------UgGCGGGC-GACG- -5'
29432 3' -59 NC_006151.1 + 82058 0.66 0.80593
Target:  5'- uGCAcguAgGCGGCCACGucgcgcAUCGUCUGgUGCa -3'
miRNA:   3'- -UGU---UgCGCUGGUGC------UGGCGGGCgACG- -5'
29432 3' -59 NC_006151.1 + 102404 0.66 0.80593
Target:  5'- cGCGGCGCGcguCGCG-CgGCCCGCgaacgagGCc -3'
miRNA:   3'- -UGUUGCGCug-GUGCuGgCGGGCGa------CG- -5'
29432 3' -59 NC_006151.1 + 101485 0.66 0.80593
Target:  5'- gGCGACGuCGugUACGucuUCGaCCCGCacgGCc -3'
miRNA:   3'- -UGUUGC-GCugGUGCu--GGC-GGGCGa--CG- -5'
29432 3' -59 NC_006151.1 + 136671 0.66 0.80593
Target:  5'- aGC-GCGCGGCCGCcgccuucuuCCGCCaCGUgcggGCg -3'
miRNA:   3'- -UGuUGCGCUGGUGcu-------GGCGG-GCGa---CG- -5'
29432 3' -59 NC_006151.1 + 123908 0.66 0.80593
Target:  5'- uGCGGCGCGGCgGCcgugacgcgGGCCGCCUcg-GCc -3'
miRNA:   3'- -UGUUGCGCUGgUG---------CUGGCGGGcgaCG- -5'
29432 3' -59 NC_006151.1 + 121906 0.66 0.80593
Target:  5'- cGCGuacGCGCgGGCCGaggggGACCGCgUGCUGg -3'
miRNA:   3'- -UGU---UGCG-CUGGUg----CUGGCGgGCGACg -5'
29432 3' -59 NC_006151.1 + 116226 0.66 0.80593
Target:  5'- gGCGAgcCGCG-CCACGGCCgagaGCUCGaggUGCg -3'
miRNA:   3'- -UGUU--GCGCuGGUGCUGG----CGGGCg--ACG- -5'
29432 3' -59 NC_006151.1 + 91237 0.66 0.80593
Target:  5'- gGCGACGCucggggagccgGGCCccgucGCGAggaCGCCCGCguccGCa -3'
miRNA:   3'- -UGUUGCG-----------CUGG-----UGCUg--GCGGGCGa---CG- -5'
29432 3' -59 NC_006151.1 + 85301 0.66 0.80593
Target:  5'- uGCcGCGCGAgcagcuCCACGGgCGCUacgCGCUGg -3'
miRNA:   3'- -UGuUGCGCU------GGUGCUgGCGG---GCGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.