miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29432 5' -56.2 NC_006151.1 + 137034 0.66 0.860645
Target:  5'- cCUGCcgGaCGCGUGCcccccgGCGCcGGUGUACc -3'
miRNA:   3'- -GACGa-C-GCGUACGa-----CGUGuUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 130403 0.66 0.860645
Target:  5'- -aGCgccuCGCccGCgaGCGCGGGCGCGCc -3'
miRNA:   3'- gaCGac--GCGuaCGa-CGUGUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 65169 0.66 0.860645
Target:  5'- uUGCgGCGCGcgagGCggaaGCGCGgguccgcgAGCGCGCu -3'
miRNA:   3'- gACGaCGCGUa---CGa---CGUGU--------UCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 142130 0.66 0.860645
Target:  5'- -cGCgaggaugGCGCccgAUGcCUGCGCcGGCGCAg -3'
miRNA:   3'- gaCGa------CGCG---UAC-GACGUGuUCGCGUg -5'
29432 5' -56.2 NC_006151.1 + 138188 0.66 0.860645
Target:  5'- -gGCcaugGCGCccGUGCUGCGgcaccuCGAcGCGCACu -3'
miRNA:   3'- gaCGa---CGCG--UACGACGU------GUU-CGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 120510 0.66 0.860645
Target:  5'- gCUGCaGCGCAaccaGCUGC-C-GGCGCGg -3'
miRNA:   3'- -GACGaCGCGUa---CGACGuGuUCGCGUg -5'
29432 5' -56.2 NC_006151.1 + 53519 0.66 0.859858
Target:  5'- -cGCcGCGCGccccgugagccGCUccagggcGCGCAGGCGCGCa -3'
miRNA:   3'- gaCGaCGCGUa----------CGA-------CGUGUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 7167 0.66 0.858277
Target:  5'- -cGCgagGCGCAUGCUcgGCACGcgacccacccccguGGUGCuaGCg -3'
miRNA:   3'- gaCGa--CGCGUACGA--CGUGU--------------UCGCG--UG- -5'
29432 5' -56.2 NC_006151.1 + 59866 0.66 0.857483
Target:  5'- -aGCUGcCGCAgcaccgcuggcugGCgaagGCGucCAGGCGCGCg -3'
miRNA:   3'- gaCGAC-GCGUa------------CGa---CGU--GUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 59717 0.66 0.852675
Target:  5'- aCUGCUcccGCGuCAcgggGUUG-GCGAGCGCGCg -3'
miRNA:   3'- -GACGA---CGC-GUa---CGACgUGUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 78437 0.66 0.852675
Target:  5'- -cGCcgucaacCGCGUGCUGCGCGAG-GCGa -3'
miRNA:   3'- gaCGac-----GCGUACGACGUGUUCgCGUg -5'
29432 5' -56.2 NC_006151.1 + 99339 0.66 0.852675
Target:  5'- -cGCaGCGCGccgucgGCUGCAC-GGCGguCg -3'
miRNA:   3'- gaCGaCGCGUa-----CGACGUGuUCGCguG- -5'
29432 5' -56.2 NC_006151.1 + 136083 0.66 0.852675
Target:  5'- -cGgaGCGCccGCUGCGCuccaucgcggucGGGCGcCGCg -3'
miRNA:   3'- gaCgaCGCGuaCGACGUG------------UUCGC-GUG- -5'
29432 5' -56.2 NC_006151.1 + 103740 0.66 0.852675
Target:  5'- -cGCUgGCGCG-GCagUGCGagGAGCGCGCc -3'
miRNA:   3'- gaCGA-CGCGUaCG--ACGUg-UUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 106657 0.66 0.852675
Target:  5'- -cGCgGCGCAcgUGCgcgaggccgcgGCGCucGGCGCGCc -3'
miRNA:   3'- gaCGaCGCGU--ACGa----------CGUGu-UCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 122661 0.66 0.852675
Target:  5'- -aGCgGCGCGaGCgccGCGCcgAGGUGCGCg -3'
miRNA:   3'- gaCGaCGCGUaCGa--CGUG--UUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 69780 0.66 0.851867
Target:  5'- -cGC-GCGCGUaguuggcgaacugGCgGCACAGGCGCu- -3'
miRNA:   3'- gaCGaCGCGUA-------------CGaCGUGUUCGCGug -5'
29432 5' -56.2 NC_006151.1 + 68099 0.66 0.844494
Target:  5'- -gGCU-CGCGUcGCccaGCGuCAGGCGCACg -3'
miRNA:   3'- gaCGAcGCGUA-CGa--CGU-GUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 139218 0.66 0.844494
Target:  5'- -gGCgGCGaCGcUGCcGCACAucGCGCGCg -3'
miRNA:   3'- gaCGaCGC-GU-ACGaCGUGUu-CGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 129564 0.66 0.844494
Target:  5'- -aGCUgGCGCAUgacggcgucgcGCUGCucccagaacuccGCGAGCGgGCa -3'
miRNA:   3'- gaCGA-CGCGUA-----------CGACG------------UGUUCGCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.