miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29432 5' -56.2 NC_006151.1 + 92063 1.09 0.001931
Target:  5'- cCUGCUGCGCAUGCUGCACAAGCGCACc -3'
miRNA:   3'- -GACGACGCGUACGACGUGUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 15288 0.82 0.13883
Target:  5'- -cGCUGCGCAgcgcGCUGCGCGAGCucaacgaGCGCg -3'
miRNA:   3'- gaCGACGCGUa---CGACGUGUUCG-------CGUG- -5'
29432 5' -56.2 NC_006151.1 + 103326 0.78 0.239232
Target:  5'- -aGCUGCGCAcGCUgGUGCAGGCgGCGCa -3'
miRNA:   3'- gaCGACGCGUaCGA-CGUGUUCG-CGUG- -5'
29432 5' -56.2 NC_006151.1 + 132166 0.77 0.25139
Target:  5'- -aGCUGCGCG-GCcgGCACcGGCGCGCc -3'
miRNA:   3'- gaCGACGCGUaCGa-CGUGuUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 84154 0.77 0.28401
Target:  5'- -gGCUGUGCcaGCUGCGCGacucGGCGCGCc -3'
miRNA:   3'- gaCGACGCGuaCGACGUGU----UCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 85542 0.76 0.297256
Target:  5'- gCUGCgGCGCcUGCUGCACAAcggcaacGUGUACg -3'
miRNA:   3'- -GACGaCGCGuACGACGUGUU-------CGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 114316 0.76 0.305142
Target:  5'- gUGCUGCGCGacggggGcCUGCGCGAcGUGCGCg -3'
miRNA:   3'- gACGACGCGUa-----C-GACGUGUU-CGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 76171 0.76 0.305142
Target:  5'- -cGUUGCGCGcgaGCUGCugGauGGCGCGCa -3'
miRNA:   3'- gaCGACGCGUa--CGACGugU--UCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 113043 0.76 0.308049
Target:  5'- gUGCUGCGCGgcgGCggaGCGCGaggacgacgcguacgAGCGCGCg -3'
miRNA:   3'- gACGACGCGUa--CGa--CGUGU---------------UCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 66485 0.76 0.312449
Target:  5'- -cGCUGCaCAacUGCUGCGaGAGCGCGCg -3'
miRNA:   3'- gaCGACGcGU--ACGACGUgUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 102982 0.75 0.342996
Target:  5'- gCUGCUgGCGCA-GCUGCugGAgGCGgGCg -3'
miRNA:   3'- -GACGA-CGCGUaCGACGugUU-CGCgUG- -5'
29432 5' -56.2 NC_006151.1 + 57058 0.75 0.348558
Target:  5'- -aGCUGCucguagggcaccggGCcgGCgccGCGCAGGCGCACg -3'
miRNA:   3'- gaCGACG--------------CGuaCGa--CGUGUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 139304 0.75 0.350961
Target:  5'- uCUGCgGCGCGUGCUGCuCGAcCGUGCu -3'
miRNA:   3'- -GACGaCGCGUACGACGuGUUcGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 100893 0.75 0.350961
Target:  5'- gUGCUGCGCc-GCgGCGCGcGCGCGCc -3'
miRNA:   3'- gACGACGCGuaCGaCGUGUuCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 121181 0.75 0.358242
Target:  5'- -cGCgGC-CGUGCUGCACGcgcucggGGCGCGCa -3'
miRNA:   3'- gaCGaCGcGUACGACGUGU-------UCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 83318 0.75 0.367283
Target:  5'- -cGUUGCGCAggGCcGUgaGCAGGCGCGCg -3'
miRNA:   3'- gaCGACGCGUa-CGaCG--UGUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 104168 0.75 0.367283
Target:  5'- -aGCUGCGCcccGCcGC-CGAGCGCGCg -3'
miRNA:   3'- gaCGACGCGua-CGaCGuGUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 74765 0.74 0.384119
Target:  5'- aUGCacUGCGCcacgaGCcGCGCGAGCGCGCa -3'
miRNA:   3'- gACG--ACGCGua---CGaCGUGUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 96587 0.74 0.392727
Target:  5'- -cGCgGCGCGagGCgccggGCGCGGGCGCGCc -3'
miRNA:   3'- gaCGaCGCGUa-CGa----CGUGUUCGCGUG- -5'
29432 5' -56.2 NC_006151.1 + 56372 0.74 0.401459
Target:  5'- -aGCUacgGCGCcUGCUGCACGucGGCGcCACg -3'
miRNA:   3'- gaCGA---CGCGuACGACGUGU--UCGC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.