miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29433 3' -51.4 NC_006151.1 + 111786 0.66 0.99031
Target:  5'- aGCaCGUACuCCagcggGAAGGUGuCGUUGGa -3'
miRNA:   3'- -CG-GCAUGuGGag---CUUCCACuGCAACU- -5'
29433 3' -51.4 NC_006151.1 + 117121 0.66 0.99031
Target:  5'- gGCCGgcgcACACCgucucgCGGAGGUGcGCGa--- -3'
miRNA:   3'- -CGGCa---UGUGGa-----GCUUCCAC-UGCaacu -5'
29433 3' -51.4 NC_006151.1 + 105712 0.66 0.987471
Target:  5'- gGCCGcGCGCCUCGAcGGcGcCGUg-- -3'
miRNA:   3'- -CGGCaUGUGGAGCUuCCaCuGCAacu -5'
29433 3' -51.4 NC_006151.1 + 76797 0.66 0.987471
Target:  5'- cGCCGUacaGCGCCccggCGAGGGcgGGCGcguagUGGc -3'
miRNA:   3'- -CGGCA---UGUGGa---GCUUCCa-CUGCa----ACU- -5'
29433 3' -51.4 NC_006151.1 + 27227 0.66 0.987471
Target:  5'- cGCCGUggacgcGCACCUCcucGGGGUcgGGCGggGGc -3'
miRNA:   3'- -CGGCA------UGUGGAGc--UUCCA--CUGCaaCU- -5'
29433 3' -51.4 NC_006151.1 + 115133 0.67 0.98477
Target:  5'- cGCgCGUGCGCCUCGGccagcacgcgcccgaAGGcGGCGa--- -3'
miRNA:   3'- -CG-GCAUGUGGAGCU---------------UCCaCUGCaacu -5'
29433 3' -51.4 NC_006151.1 + 51888 0.67 0.98403
Target:  5'- gGUCGUcCACgaCUCGAcaaagucgcugAGGuUGACGUUGAg -3'
miRNA:   3'- -CGGCAuGUG--GAGCU-----------UCC-ACUGCAACU- -5'
29433 3' -51.4 NC_006151.1 + 8722 0.67 0.98403
Target:  5'- cGCCGU-CGCCUCGGuccgaggagggGGGUGcccggGCGUg-- -3'
miRNA:   3'- -CGGCAuGUGGAGCU-----------UCCAC-----UGCAacu -5'
29433 3' -51.4 NC_006151.1 + 104460 0.67 0.982061
Target:  5'- cGCCGUGgGCUUCGucGG-GGCGg--- -3'
miRNA:   3'- -CGGCAUgUGGAGCuuCCaCUGCaacu -5'
29433 3' -51.4 NC_006151.1 + 5233 0.67 0.982061
Target:  5'- gGCCGaGCGCCgcgCGgcGGcGGCGggGGc -3'
miRNA:   3'- -CGGCaUGUGGa--GCuuCCaCUGCaaCU- -5'
29433 3' -51.4 NC_006151.1 + 129039 0.68 0.97506
Target:  5'- cGCgCGUACACCUCGc-GGUG-CGg--- -3'
miRNA:   3'- -CG-GCAUGUGGAGCuuCCACuGCaacu -5'
29433 3' -51.4 NC_006151.1 + 38070 0.68 0.97506
Target:  5'- cCCGccUGCCUCGAggAGGUGACGg--- -3'
miRNA:   3'- cGGCauGUGGAGCU--UCCACUGCaacu -5'
29433 3' -51.4 NC_006151.1 + 51157 0.68 0.972335
Target:  5'- gGCCgGUACGCggUGAuGGUGACGUg-- -3'
miRNA:   3'- -CGG-CAUGUGgaGCUuCCACUGCAacu -5'
29433 3' -51.4 NC_006151.1 + 45316 0.68 0.969401
Target:  5'- gGCCGggAgGCUggGAGGGUGGCGgugGAg -3'
miRNA:   3'- -CGGCa-UgUGGagCUUCCACUGCaa-CU- -5'
29433 3' -51.4 NC_006151.1 + 118142 0.68 0.966251
Target:  5'- cGCCGacgACGCCgCGgcGGUGGCGc--- -3'
miRNA:   3'- -CGGCa--UGUGGaGCuuCCACUGCaacu -5'
29433 3' -51.4 NC_006151.1 + 127569 0.68 0.964255
Target:  5'- cGCCGccgGCGCCUCGuucgccguccccgucGGGGUcGACGUa-- -3'
miRNA:   3'- -CGGCa--UGUGGAGC---------------UUCCA-CUGCAacu -5'
29433 3' -51.4 NC_006151.1 + 21412 0.68 0.962879
Target:  5'- gGCgGUGCggcgucucggGCCUCGggGGUcGCGgcgUGGg -3'
miRNA:   3'- -CGgCAUG----------UGGAGCuuCCAcUGCa--ACU- -5'
29433 3' -51.4 NC_006151.1 + 76253 0.69 0.95928
Target:  5'- cCCGaGgGCCUCGAcggcgaucgagaAGGcGGCGUUGAg -3'
miRNA:   3'- cGGCaUgUGGAGCU------------UCCaCUGCAACU- -5'
29433 3' -51.4 NC_006151.1 + 115905 0.69 0.955448
Target:  5'- cCCGUugACCUCGAAGG---CGcUGAa -3'
miRNA:   3'- cGGCAugUGGAGCUUCCacuGCaACU- -5'
29433 3' -51.4 NC_006151.1 + 40519 0.69 0.955448
Target:  5'- gGCCGgaggugGCugCggcggcggCGGAGGUGGCGgcggUGGu -3'
miRNA:   3'- -CGGCa-----UGugGa-------GCUUCCACUGCa---ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.