miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29433 5' -60.5 NC_006151.1 + 118164 0.66 0.73752
Target:  5'- gCGCCGCUGGUgcgCGGCC-UGA-C-CGUCg -3'
miRNA:   3'- -GCGGCGGCCA---GCUGGaACUcGcGCAG- -5'
29433 5' -60.5 NC_006151.1 + 10490 0.66 0.73752
Target:  5'- aGCCGcCCGGcgCGcgcccgccGCCgcaGGCGCGUCc -3'
miRNA:   3'- gCGGC-GGCCa-GC--------UGGaacUCGCGCAG- -5'
29433 5' -60.5 NC_006151.1 + 3393 0.66 0.73752
Target:  5'- gGCCGCCucGGagGGCCgc-GGCGUGUg -3'
miRNA:   3'- gCGGCGG--CCagCUGGaacUCGCGCAg -5'
29433 5' -60.5 NC_006151.1 + 83112 0.66 0.73752
Target:  5'- gCGCCcgcGCCGGUCGcagagcucgggcGCCUUguacgcgccaaaGAGgGUGUCc -3'
miRNA:   3'- -GCGG---CGGCCAGC------------UGGAA------------CUCgCGCAG- -5'
29433 5' -60.5 NC_006151.1 + 96526 0.66 0.73752
Target:  5'- uCGUCcacCCGGgagaaGGCCUUGAGCcCGUCc -3'
miRNA:   3'- -GCGGc--GGCCag---CUGGAACUCGcGCAG- -5'
29433 5' -60.5 NC_006151.1 + 10422 0.66 0.73752
Target:  5'- aCGCCGCgGGUgGGCCgagGccGGCGgGg- -3'
miRNA:   3'- -GCGGCGgCCAgCUGGaa-C--UCGCgCag -5'
29433 5' -60.5 NC_006151.1 + 85027 0.66 0.73752
Target:  5'- gGCCGCauGUCGcgcACCUucaUGGGCGUGa- -3'
miRNA:   3'- gCGGCGgcCAGC---UGGA---ACUCGCGCag -5'
29433 5' -60.5 NC_006151.1 + 104016 0.66 0.73752
Target:  5'- gCGCCGCgCGG-CGGaggugGAGCGCG-Cg -3'
miRNA:   3'- -GCGGCG-GCCaGCUggaa-CUCGCGCaG- -5'
29433 5' -60.5 NC_006151.1 + 113675 0.66 0.73752
Target:  5'- uCGCCGCCGa--GaACCgcuucgagGGGCGCGUg -3'
miRNA:   3'- -GCGGCGGCcagC-UGGaa------CUCGCGCAg -5'
29433 5' -60.5 NC_006151.1 + 125613 0.66 0.73183
Target:  5'- cCGcCCGCUGGUC-ACCUUcgagcacaacggcacGGGCGUGaUCg -3'
miRNA:   3'- -GC-GGCGGCCAGcUGGAA---------------CUCGCGC-AG- -5'
29433 5' -60.5 NC_006151.1 + 83179 0.66 0.72802
Target:  5'- uCGUCGCgCGGgCGGCagagcucgUUGAGCGCGa- -3'
miRNA:   3'- -GCGGCG-GCCaGCUGg-------AACUCGCGCag -5'
29433 5' -60.5 NC_006151.1 + 81496 0.66 0.72802
Target:  5'- aCGCgGCC-GUCGGCga-GAGCGCGg- -3'
miRNA:   3'- -GCGgCGGcCAGCUGgaaCUCGCGCag -5'
29433 5' -60.5 NC_006151.1 + 48711 0.66 0.72802
Target:  5'- cCGCCGCCGccCGGCCcgcgaaGGGCacgcccgcgGCGUCg -3'
miRNA:   3'- -GCGGCGGCcaGCUGGaa----CUCG---------CGCAG- -5'
29433 5' -60.5 NC_006151.1 + 89883 0.66 0.72802
Target:  5'- gCGCCGCuCGGgcUCGGCggUGGGgucgGCGUCc -3'
miRNA:   3'- -GCGGCG-GCC--AGCUGgaACUCg---CGCAG- -5'
29433 5' -60.5 NC_006151.1 + 104979 0.66 0.72802
Target:  5'- cCGCCGCCGGccucgcucaacaUCGACC--GGGcCGCcUCc -3'
miRNA:   3'- -GCGGCGGCC------------AGCUGGaaCUC-GCGcAG- -5'
29433 5' -60.5 NC_006151.1 + 136980 0.66 0.718442
Target:  5'- gGCCGCCGcGcCGGgCggcGGGCGCG-Cg -3'
miRNA:   3'- gCGGCGGC-CaGCUgGaa-CUCGCGCaG- -5'
29433 5' -60.5 NC_006151.1 + 11031 0.66 0.718442
Target:  5'- uCGCCggGCCGGcCGGCCggGGGCcCGg- -3'
miRNA:   3'- -GCGG--CGGCCaGCUGGaaCUCGcGCag -5'
29433 5' -60.5 NC_006151.1 + 84352 0.66 0.718442
Target:  5'- aCGUCGCCGGcccgCGGCggUGAuCGCGaUCg -3'
miRNA:   3'- -GCGGCGGCCa---GCUGgaACUcGCGC-AG- -5'
29433 5' -60.5 NC_006151.1 + 51373 0.66 0.718442
Target:  5'- gGCCcguGCUGGaucgugacgCGGCCcggggcGAGCGCGUCg -3'
miRNA:   3'- gCGG---CGGCCa--------GCUGGaa----CUCGCGCAG- -5'
29433 5' -60.5 NC_006151.1 + 135771 0.66 0.71748
Target:  5'- aCGgCGCCGGgcuggacgaGGCCUUcucacugccgggcGAGCGCGcCg -3'
miRNA:   3'- -GCgGCGGCCag-------CUGGAA-------------CUCGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.