miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29434 3' -56.2 NC_006151.1 + 127542 0.66 0.916323
Target:  5'- -gGGcccAGGGGGCGucGucGUCGuGGCCg -3'
miRNA:   3'- gaCC---UCCUCUGCcuCuuCAGCuCCGG- -5'
29434 3' -56.2 NC_006151.1 + 26257 0.66 0.916323
Target:  5'- -aGaGGGGAGGgGGAGAGGggcaaacgaUGGGGCg -3'
miRNA:   3'- gaC-CUCCUCUgCCUCUUCa--------GCUCCGg -5'
29434 3' -56.2 NC_006151.1 + 84771 0.66 0.914591
Target:  5'- -aGGAGGcGGACGcggcgcgcgccgccGAGGAGgcgccCGAGGCg -3'
miRNA:   3'- gaCCUCC-UCUGC--------------CUCUUCa----GCUCCGg -5'
29434 3' -56.2 NC_006151.1 + 42828 0.66 0.910468
Target:  5'- -gGGAGaGAGACGGGGuGGgagccgcCGucGCCg -3'
miRNA:   3'- gaCCUC-CUCUGCCUCuUCa------GCucCGG- -5'
29434 3' -56.2 NC_006151.1 + 23430 0.66 0.910468
Target:  5'- gUGGGGGcgaugGGugGGAGGGuGgcccCGGGGCg -3'
miRNA:   3'- gACCUCC-----UCugCCUCUU-Ca---GCUCCGg -5'
29434 3' -56.2 NC_006151.1 + 15802 0.66 0.910468
Target:  5'- -aGGGGaGGACGGGGggGaaGAcGGCg -3'
miRNA:   3'- gaCCUCcUCUGCCUCuuCagCU-CCGg -5'
29434 3' -56.2 NC_006151.1 + 9633 0.66 0.910468
Target:  5'- -gGGGGGAaGCGG-GAGGgaGAGGCg -3'
miRNA:   3'- gaCCUCCUcUGCCuCUUCagCUCCGg -5'
29434 3' -56.2 NC_006151.1 + 31417 0.66 0.904379
Target:  5'- -gGGaAGGGGAagGGGGggGaCGGGGUg -3'
miRNA:   3'- gaCC-UCCUCUg-CCUCuuCaGCUCCGg -5'
29434 3' -56.2 NC_006151.1 + 13414 0.66 0.904379
Target:  5'- aUGGGGGAGcCGGGcccgcGUcccCGGGGCCc -3'
miRNA:   3'- gACCUCCUCuGCCUcuu--CA---GCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 13973 0.66 0.904379
Target:  5'- aUGGGGGAGcCGGGcccgcGUcccCGGGGCCc -3'
miRNA:   3'- gACCUCCUCuGCCUcuu--CA---GCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 37516 0.66 0.904379
Target:  5'- aUGGGGGAcuCGaGGAAGcagcaCGAGGCCc -3'
miRNA:   3'- gACCUCCUcuGCcUCUUCa----GCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 15519 0.66 0.89806
Target:  5'- -aGGAGGGGGaagaGGaAGAAGaCGAGGa- -3'
miRNA:   3'- gaCCUCCUCUg---CC-UCUUCaGCUCCgg -5'
29434 3' -56.2 NC_006151.1 + 72606 0.66 0.89806
Target:  5'- -gGGGGGcaGGGCGGAGAcgacGGUcCGGcGGUCc -3'
miRNA:   3'- gaCCUCC--UCUGCCUCU----UCA-GCU-CCGG- -5'
29434 3' -56.2 NC_006151.1 + 90754 0.66 0.89806
Target:  5'- -cGGGGGcGGCGGGcacgguggcGggGUCGgcGGGCg -3'
miRNA:   3'- gaCCUCCuCUGCCU---------CuuCAGC--UCCGg -5'
29434 3' -56.2 NC_006151.1 + 110480 0.66 0.89806
Target:  5'- uUGGGGGGGAuUGGGGGAcUUGGGGg- -3'
miRNA:   3'- gACCUCCUCU-GCCUCUUcAGCUCCgg -5'
29434 3' -56.2 NC_006151.1 + 30333 0.66 0.89806
Target:  5'- --uGAGGAGGCGGcGgcGgcgCGAGGgCg -3'
miRNA:   3'- gacCUCCUCUGCCuCuuCa--GCUCCgG- -5'
29434 3' -56.2 NC_006151.1 + 8460 0.66 0.897416
Target:  5'- gUGGAGGgucgggaGGACGGAuGGucGGUCGgacgGGGCg -3'
miRNA:   3'- gACCUCC-------UCUGCCU-CU--UCAGC----UCCGg -5'
29434 3' -56.2 NC_006151.1 + 40857 0.66 0.89612
Target:  5'- gUGGGGGuGACGGGGGuccuccuccuggagGGUCuuGGUg -3'
miRNA:   3'- gACCUCCuCUGCCUCU--------------UCAGcuCCGg -5'
29434 3' -56.2 NC_006151.1 + 21499 0.66 0.892178
Target:  5'- -cGGGGGgcgcgggcgucaccgGGGCGGGcucgggcuucggccGggGcCGGGGCCg -3'
miRNA:   3'- gaCCUCC---------------UCUGCCU--------------CuuCaGCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 41863 0.66 0.891513
Target:  5'- -gGGGGGGGGgGGAGGAGccCGGcGUCa -3'
miRNA:   3'- gaCCUCCUCUgCCUCUUCa-GCUcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.