miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29434 3' -56.2 NC_006151.1 + 1775 0.8 0.216006
Target:  5'- -cGGAGGAGAaGGAGAGGagGAgGGCCa -3'
miRNA:   3'- gaCCUCCUCUgCCUCUUCagCU-CCGG- -5'
29434 3' -56.2 NC_006151.1 + 1825 0.69 0.778734
Target:  5'- -gGGAGGcaagcgccgccGGGCcGAGggGacCGAGGCCg -3'
miRNA:   3'- gaCCUCC-----------UCUGcCUCuuCa-GCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 1881 0.73 0.554092
Target:  5'- -aGGAGGAgGACGGGGAcggggacgaggacgaGGaCGAGGaCCg -3'
miRNA:   3'- gaCCUCCU-CUGCCUCU---------------UCaGCUCC-GG- -5'
29434 3' -56.2 NC_006151.1 + 1937 0.71 0.671405
Target:  5'- -gGGAGaGaAGACGGAGGAGaaG-GGCCu -3'
miRNA:   3'- gaCCUC-C-UCUGCCUCUUCagCuCCGG- -5'
29434 3' -56.2 NC_006151.1 + 1974 0.74 0.463584
Target:  5'- gUGGAGGGGcCGGAGAgucagagcagAGUCcggccGGGCCg -3'
miRNA:   3'- gACCUCCUCuGCCUCU----------UCAGc----UCCGG- -5'
29434 3' -56.2 NC_006151.1 + 3002 0.68 0.831444
Target:  5'- cCUGGGcguuGAGGCGGccGAuGUCGGGGCg -3'
miRNA:   3'- -GACCUc---CUCUGCCu-CUuCAGCUCCGg -5'
29434 3' -56.2 NC_006151.1 + 3515 0.68 0.823061
Target:  5'- -aGGAGGAGGaGGAGGacagcagcgcGGgagCGGGGUCc -3'
miRNA:   3'- gaCCUCCUCUgCCUCU----------UCa--GCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 3749 0.72 0.600342
Target:  5'- -cGGGGGAGcuggcguagcCGGAGGAGccggaGAGGCCg -3'
miRNA:   3'- gaCCUCCUCu---------GCCUCUUCag---CUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 3840 0.74 0.501255
Target:  5'- gCUGGAGGGccCGGAGccGggGAGGCCg -3'
miRNA:   3'- -GACCUCCUcuGCCUCuuCagCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 5011 0.74 0.501255
Target:  5'- -cGGGGGccGGGCGGGcuccGggGcCGGGGCCg -3'
miRNA:   3'- gaCCUCC--UCUGCCU----CuuCaGCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 5058 0.9 0.054684
Target:  5'- -aGGAGGAGGCGGAGGAGgccgagggccgCGGGGCCg -3'
miRNA:   3'- gaCCUCCUCUGCCUCUUCa----------GCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 5211 0.72 0.570083
Target:  5'- -aGGAGGAcGA-GGAcGAGGagGAGGCCg -3'
miRNA:   3'- gaCCUCCU-CUgCCU-CUUCagCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 5259 0.68 0.805787
Target:  5'- -gGGcccGGGGGGCGGAGGgcgAG-CG-GGCCg -3'
miRNA:   3'- gaCC---UCCUCUGCCUCU---UCaGCuCCGG- -5'
29434 3' -56.2 NC_006151.1 + 5501 0.78 0.308148
Target:  5'- uUGGAGGAGACGGGGcuc-CGGGcGCCa -3'
miRNA:   3'- gACCUCCUCUGCCUCuucaGCUC-CGG- -5'
29434 3' -56.2 NC_006151.1 + 5664 0.78 0.315255
Target:  5'- -cGGGGGAGGCuGGGGAAG-CG-GGCCc -3'
miRNA:   3'- gaCCUCCUCUG-CCUCUUCaGCuCCGG- -5'
29434 3' -56.2 NC_006151.1 + 5717 0.66 0.884741
Target:  5'- gCUGGcugugcuGGuGGCGccGggGUcCGAGGCCg -3'
miRNA:   3'- -GACCu------CCuCUGCcuCuuCA-GCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 5835 0.76 0.376515
Target:  5'- -aGGAGGAGgccggggaggcuGCGGAGggGgacgagcgccCGGGGCCg -3'
miRNA:   3'- gaCCUCCUC------------UGCCUCuuCa---------GCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 6224 0.73 0.544165
Target:  5'- -cGGAGGAGccGCGGcgccGGGAgcccuggcugccgccGUCGGGGCCg -3'
miRNA:   3'- gaCCUCCUC--UGCC----UCUU---------------CAGCUCCGG- -5'
29434 3' -56.2 NC_006151.1 + 8011 0.69 0.769446
Target:  5'- -gGGAGGGGGCGcGAGAccGG-CucGGCCu -3'
miRNA:   3'- gaCCUCCUCUGC-CUCU--UCaGcuCCGG- -5'
29434 3' -56.2 NC_006151.1 + 8106 0.71 0.640976
Target:  5'- -aGGGGGAGG-GGGGggGUCGGaGCg -3'
miRNA:   3'- gaCCUCCUCUgCCUCuuCAGCUcCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.