miRNA display CGI


Results 1 - 20 of 302 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29434 5' -63.6 NC_006151.1 + 138727 0.66 0.622805
Target:  5'- gCGcGGGUCGUguaCgCGcGCCGCGacugccGCGCCUa -3'
miRNA:   3'- -GCuUCCAGCA---GgGC-CGGCGC------CGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 57236 0.66 0.622805
Target:  5'- aGgcGGcgCG-CgCGGCCuCGGCGUCCg -3'
miRNA:   3'- gCuuCCa-GCaGgGCCGGcGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 58552 0.66 0.622805
Target:  5'- ---cGGUCGUCUCcucuucGCCGCcGCcGCCCg -3'
miRNA:   3'- gcuuCCAGCAGGGc-----CGGCGcCG-CGGG- -5'
29434 5' -63.6 NC_006151.1 + 125199 0.66 0.622805
Target:  5'- --cGGcGUCGUgggccCCgCGGCCcccGCGGCcGCCCg -3'
miRNA:   3'- gcuUC-CAGCA-----GG-GCCGG---CGCCG-CGGG- -5'
29434 5' -63.6 NC_006151.1 + 141379 0.66 0.622805
Target:  5'- aCGggGG-CGggcCCCgGGCaaacaGCGGCGUguCCg -3'
miRNA:   3'- -GCuuCCaGCa--GGG-CCGg----CGCCGCG--GG- -5'
29434 5' -63.6 NC_006151.1 + 11155 0.66 0.622805
Target:  5'- ---cGGUUuccCCUGG-CGCGGCGCCUa -3'
miRNA:   3'- gcuuCCAGca-GGGCCgGCGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 18733 0.66 0.622805
Target:  5'- aGAucgcGUCGUCgCC-GCCGcCGGgGCCCc -3'
miRNA:   3'- gCUuc--CAGCAG-GGcCGGC-GCCgCGGG- -5'
29434 5' -63.6 NC_006151.1 + 20844 0.66 0.622805
Target:  5'- -aGAGGUCGUaCUCGGCgGCGuacucGCGCg- -3'
miRNA:   3'- gcUUCCAGCA-GGGCCGgCGC-----CGCGgg -5'
29434 5' -63.6 NC_006151.1 + 87510 0.66 0.622805
Target:  5'- aGGccGcCGcCCCGGCCGCGccCGCCUc -3'
miRNA:   3'- gCUucCaGCaGGGCCGGCGCc-GCGGG- -5'
29434 5' -63.6 NC_006151.1 + 106202 0.66 0.622805
Target:  5'- cCGgcGGUgCGgcucgcccUCCCcgaccugaugguGGCCGCGGUGgCCg -3'
miRNA:   3'- -GCuuCCA-GC--------AGGG------------CCGGCGCCGCgGG- -5'
29434 5' -63.6 NC_006151.1 + 122981 0.66 0.622805
Target:  5'- aCGggGG-CGUCggcgacgaagaCgGGCC-CGGCGCgCCc -3'
miRNA:   3'- -GCuuCCaGCAG-----------GgCCGGcGCCGCG-GG- -5'
29434 5' -63.6 NC_006151.1 + 6263 0.66 0.617035
Target:  5'- -cGGGGcCGgacgcgaugcccucuUCCuCGGCCGCGGCGgCg -3'
miRNA:   3'- gcUUCCaGC---------------AGG-GCCGGCGCCGCgGg -5'
29434 5' -63.6 NC_006151.1 + 117662 0.66 0.613191
Target:  5'- -cGGGG-CGUCCaGGCacCGCGGCGCg- -3'
miRNA:   3'- gcUUCCaGCAGGgCCG--GCGCCGCGgg -5'
29434 5' -63.6 NC_006151.1 + 127991 0.66 0.613191
Target:  5'- gCGgcGGcuccgCGUCgCGGUCGCGGgGCg- -3'
miRNA:   3'- -GCuuCCa----GCAGgGCCGGCGCCgCGgg -5'
29434 5' -63.6 NC_006151.1 + 139426 0.66 0.613191
Target:  5'- uGAAGGUCGgCgCGGggaCGacggguuaaaGGCGCCCc -3'
miRNA:   3'- gCUUCCAGCaGgGCCg--GCg---------CCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 49939 0.66 0.613191
Target:  5'- aCGAuccGcCGggaCCUGGCCGCGGC-CCUg -3'
miRNA:   3'- -GCUuc-CaGCa--GGGCCGGCGCCGcGGG- -5'
29434 5' -63.6 NC_006151.1 + 73770 0.66 0.613191
Target:  5'- aCGcAGGgcaCGUgCUgGGCgGCGGCGCgCa -3'
miRNA:   3'- -GCuUCCa--GCA-GGgCCGgCGCCGCGgG- -5'
29434 5' -63.6 NC_006151.1 + 90726 0.66 0.613191
Target:  5'- gCGgcGG-CGacggUGGCgGCGGCGCCCu -3'
miRNA:   3'- -GCuuCCaGCagg-GCCGgCGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 106443 0.66 0.613191
Target:  5'- cCGAGGGcCGcuUCUCGgagacggaGCUGUgGGCGCCCu -3'
miRNA:   3'- -GCUUCCaGC--AGGGC--------CGGCG-CCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 77515 0.66 0.613191
Target:  5'- aCGGAGcuggcgCGcCUCGGCCGCgcgugGGCcGCCCc -3'
miRNA:   3'- -GCUUCca----GCaGGGCCGGCG-----CCG-CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.