miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29434 5' -63.6 NC_006151.1 + 91097 1.1 0.00058
Target:  5'- gCGAAGGUCGUCCCGGCCGCGGCGCCCu -3'
miRNA:   3'- -GCUUCCAGCAGGGCCGGCGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 15033 0.81 0.070585
Target:  5'- aGGAGGUgcgCGUCCaCGGCgCGCGGgGCCCc -3'
miRNA:   3'- gCUUCCA---GCAGG-GCCG-GCGCCgCGGG- -5'
29434 5' -63.6 NC_006151.1 + 34000 0.81 0.072386
Target:  5'- cCGGAGGggCGUCCCGGCgCGcCGGCccgGCCCu -3'
miRNA:   3'- -GCUUCCa-GCAGGGCCG-GC-GCCG---CGGG- -5'
29434 5' -63.6 NC_006151.1 + 131107 0.8 0.082072
Target:  5'- gCGggGGg---CCCGGCCGCGGCGCg- -3'
miRNA:   3'- -GCuuCCagcaGGGCCGGCGCCGCGgg -5'
29434 5' -63.6 NC_006151.1 + 64105 0.8 0.090701
Target:  5'- aCGAgaagAGGUCGUggCCCGGCgGUGGCGCgCCc -3'
miRNA:   3'- -GCU----UCCAGCA--GGGCCGgCGCCGCG-GG- -5'
29434 5' -63.6 NC_006151.1 + 36731 0.78 0.122024
Target:  5'- aGgcGGcUCGaUCCuCGGCCGCuuGGCGCCCg -3'
miRNA:   3'- gCuuCC-AGC-AGG-GCCGGCG--CCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 135581 0.77 0.132585
Target:  5'- cCGGAGGcggaguUCGUccggcggcucauaagCCCucccacGGCCGCGGCGCCCg -3'
miRNA:   3'- -GCUUCC------AGCA---------------GGG------CCGGCGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 106368 0.77 0.134534
Target:  5'- aCGcGGGcgCGcgCCC-GCCGCGGCGCCCg -3'
miRNA:   3'- -GCuUCCa-GCa-GGGcCGGCGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 81369 0.76 0.151829
Target:  5'- cCGgcGGgcgccagcgCGagCCGcGCCGCGGCGCCCa -3'
miRNA:   3'- -GCuuCCa--------GCagGGC-CGGCGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 4777 0.76 0.155522
Target:  5'- aGAcGGgcaCGggCCCGGCCGCGGCGCg- -3'
miRNA:   3'- gCUuCCa--GCa-GGGCCGGCGCCGCGgg -5'
29434 5' -63.6 NC_006151.1 + 37118 0.76 0.167094
Target:  5'- aCGAAGGag--UCCGGCC-CGGCGCCCc -3'
miRNA:   3'- -GCUUCCagcaGGGCCGGcGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 133612 0.75 0.179431
Target:  5'- cCGAGGGgCGUCUgggGGUCGCGGCGgCCg -3'
miRNA:   3'- -GCUUCCaGCAGGg--CCGGCGCCGCgGG- -5'
29434 5' -63.6 NC_006151.1 + 55064 0.75 0.18372
Target:  5'- gCGAGGacccggCGggCUCGGCCGCGGCGCgCCu -3'
miRNA:   3'- -GCUUCca----GCa-GGGCCGGCGCCGCG-GG- -5'
29434 5' -63.6 NC_006151.1 + 122447 0.75 0.19257
Target:  5'- gCGGAGGcggCGUCCaCGGCgGCGGCggGCgCCg -3'
miRNA:   3'- -GCUUCCa--GCAGG-GCCGgCGCCG--CG-GG- -5'
29434 5' -63.6 NC_006151.1 + 67132 0.75 0.19257
Target:  5'- ---cGGUCuUCCuCGuGCCGCGGCGCCa -3'
miRNA:   3'- gcuuCCAGcAGG-GC-CGGCGCCGCGGg -5'
29434 5' -63.6 NC_006151.1 + 127548 0.75 0.197133
Target:  5'- aGggGGcgucgUCGUCgUGGCCGCcgccGGCGCCUc -3'
miRNA:   3'- gCuuCC-----AGCAGgGCCGGCG----CCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 3865 0.74 0.201791
Target:  5'- cCGGAGGgggCG-CCCGccGCCGcCGGCGCCg -3'
miRNA:   3'- -GCUUCCa--GCaGGGC--CGGC-GCCGCGGg -5'
29434 5' -63.6 NC_006151.1 + 721 0.74 0.201791
Target:  5'- cCGggGGUcCGcgggcgggggcUUCCGcuCCGCGGCGCCCg -3'
miRNA:   3'- -GCuuCCA-GC-----------AGGGCc-GGCGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 96782 0.74 0.206544
Target:  5'- gGGAGGUgagcggagaGUCCCGaGCCGgGGCGCgCg -3'
miRNA:   3'- gCUUCCAg--------CAGGGC-CGGCgCCGCGgG- -5'
29434 5' -63.6 NC_006151.1 + 139557 0.74 0.216341
Target:  5'- gCGAGGaG-CGgcgCCCGGuCCGCGaGCGCCUg -3'
miRNA:   3'- -GCUUC-CaGCa--GGGCC-GGCGC-CGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.