miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29434 5' -63.6 NC_006151.1 + 721 0.74 0.201791
Target:  5'- cCGggGGUcCGcgggcgggggcUUCCGcuCCGCGGCGCCCg -3'
miRNA:   3'- -GCuuCCA-GC-----------AGGGCc-GGCGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 1983 0.66 0.575871
Target:  5'- cCGGAGaGUCagagcagaguccggCCgGGCCGagggGGCGCCCc -3'
miRNA:   3'- -GCUUC-CAGca------------GGgCCGGCg---CCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 2120 0.66 0.584448
Target:  5'- gGccGGcCGUCgCC-GCCGCGGaCGCCg -3'
miRNA:   3'- gCuuCCaGCAG-GGcCGGCGCC-GCGGg -5'
29434 5' -63.6 NC_006151.1 + 2158 0.66 0.594006
Target:  5'- aGAGucccCGUCcucgccggggCCGGCCcCGGCGCCCg -3'
miRNA:   3'- gCUUcca-GCAG----------GGCCGGcGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 2209 0.67 0.544698
Target:  5'- cCGGuGGGUCuccacggcgccCCCGGCgGCGGCGCg- -3'
miRNA:   3'- -GCU-UCCAGca---------GGGCCGgCGCCGCGgg -5'
29434 5' -63.6 NC_006151.1 + 2255 0.73 0.253227
Target:  5'- uCGAAGGgggcaaaGUCCCagagcacGGCCGgcggGGCGCCCg -3'
miRNA:   3'- -GCUUCCag-----CAGGG-------CCGGCg---CCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 2619 0.66 0.584448
Target:  5'- gGAccgGGGUcCGgggCCCGGCgCG-GGUGCUCa -3'
miRNA:   3'- gCU---UCCA-GCa--GGGCCG-GCgCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 3120 0.71 0.32318
Target:  5'- gCGcGGGUCccaggCCgGGCgCGgGGCGCCCu -3'
miRNA:   3'- -GCuUCCAGca---GGgCCG-GCgCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 3388 0.71 0.309581
Target:  5'- gCGAGGGcCG-CCUcggagGGCCGCGGCGUg- -3'
miRNA:   3'- -GCUUCCaGCaGGG-----CCGGCGCCGCGgg -5'
29434 5' -63.6 NC_006151.1 + 3679 0.66 0.594006
Target:  5'- cCGggGcGgCGggcCCCgGGCgCGCGGCGCUUc -3'
miRNA:   3'- -GCuuC-CaGCa--GGG-CCG-GCGCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 3865 0.74 0.201791
Target:  5'- cCGGAGGgggCG-CCCGccGCCGcCGGCGCCg -3'
miRNA:   3'- -GCUUCCa--GCaGGGC--CGGC-GCCGCGGg -5'
29434 5' -63.6 NC_006151.1 + 3973 0.66 0.593049
Target:  5'- gCGgcGGccucggCGagCCGGCCGCGGCcacguugGCCg -3'
miRNA:   3'- -GCuuCCa-----GCagGGCCGGCGCCG-------CGGg -5'
29434 5' -63.6 NC_006151.1 + 4377 0.71 0.309581
Target:  5'- uCGAcGGUCGccucCCCGGCgcgggggucCGCGGCgcgGCCCg -3'
miRNA:   3'- -GCUuCCAGCa---GGGCCG---------GCGCCG---CGGG- -5'
29434 5' -63.6 NC_006151.1 + 4777 0.76 0.155522
Target:  5'- aGAcGGgcaCGggCCCGGCCGCGGCGCg- -3'
miRNA:   3'- gCUuCCa--GCa-GGGCCGGCGCCGCGgg -5'
29434 5' -63.6 NC_006151.1 + 4896 0.68 0.456053
Target:  5'- gGAGGGUCGgagCCgGGCCaG-GGCuCCCc -3'
miRNA:   3'- gCUUCCAGCa--GGgCCGG-CgCCGcGGG- -5'
29434 5' -63.6 NC_006151.1 + 5066 0.7 0.381956
Target:  5'- gCGGAGGagG-CCgagGGCCGCGGgGCCg -3'
miRNA:   3'- -GCUUCCagCaGGg--CCGGCGCCgCGGg -5'
29434 5' -63.6 NC_006151.1 + 5229 0.67 0.546573
Target:  5'- aGGAGGcCGagcgCCgcgCGGCgGCGGCggggGCCCg -3'
miRNA:   3'- gCUUCCaGCa---GG---GCCGgCGCCG----CGGG- -5'
29434 5' -63.6 NC_006151.1 + 5344 0.72 0.302946
Target:  5'- gCGGAGGgCGcccUCuCCGG-CGCGGCGCCg -3'
miRNA:   3'- -GCUUCCaGC---AG-GGCCgGCGCCGCGGg -5'
29434 5' -63.6 NC_006151.1 + 5371 0.66 0.613191
Target:  5'- nCGGcgGGGcUGUCUCuGCgGgGGCGCCCc -3'
miRNA:   3'- -GCU--UCCaGCAGGGcCGgCgCCGCGGG- -5'
29434 5' -63.6 NC_006151.1 + 5618 0.66 0.603589
Target:  5'- gCGGAGGgggCG-CCgCcGCCGCcgGGCGCCg -3'
miRNA:   3'- -GCUUCCa--GCaGG-GcCGGCG--CCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.