miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29436 3' -53.8 NC_006151.1 + 70723 0.66 0.962473
Target:  5'- --cCGcCGCC-UGcUGGCCGGCACGc -3'
miRNA:   3'- cguGCaGCGGuACuACUGGUCGUGCu -5'
29436 3' -53.8 NC_006151.1 + 52447 0.66 0.962473
Target:  5'- aGCGCcGcCGCCGUGAcggcGGCCAGgCGCc- -3'
miRNA:   3'- -CGUG-CaGCGGUACUa---CUGGUC-GUGcu -5'
29436 3' -53.8 NC_006151.1 + 138252 0.66 0.962473
Target:  5'- gGCGCGaccgCGCagcggGUGGUGGCCaAGCcCGAc -3'
miRNA:   3'- -CGUGCa---GCGg----UACUACUGG-UCGuGCU- -5'
29436 3' -53.8 NC_006151.1 + 93797 0.66 0.958879
Target:  5'- aGCACGagGCCGagguugGAUGGCCucguCGCGGc -3'
miRNA:   3'- -CGUGCagCGGUa-----CUACUGGuc--GUGCU- -5'
29436 3' -53.8 NC_006151.1 + 2660 0.66 0.958879
Target:  5'- cGCACGUUGUCcUGgcGGCagaGGCGCa- -3'
miRNA:   3'- -CGUGCAGCGGuACuaCUGg--UCGUGcu -5'
29436 3' -53.8 NC_006151.1 + 62273 0.66 0.958879
Target:  5'- cCACGcCgGCCuucugcGUGcucGUGGCCAGCGCGGc -3'
miRNA:   3'- cGUGCaG-CGG------UAC---UACUGGUCGUGCU- -5'
29436 3' -53.8 NC_006151.1 + 64553 0.66 0.958879
Target:  5'- -gGCGagGCCGUGgcGcGCCAGCuCGAc -3'
miRNA:   3'- cgUGCagCGGUACuaC-UGGUCGuGCU- -5'
29436 3' -53.8 NC_006151.1 + 74231 0.66 0.958879
Target:  5'- cGCACG-C-CCAUGGUGcagcaguuGCC-GCGCGAg -3'
miRNA:   3'- -CGUGCaGcGGUACUAC--------UGGuCGUGCU- -5'
29436 3' -53.8 NC_006151.1 + 75124 0.66 0.958879
Target:  5'- aGCugGUCggcgGCCGgcggcGcgGcCCAGCGCGGg -3'
miRNA:   3'- -CGugCAG----CGGUa----CuaCuGGUCGUGCU- -5'
29436 3' -53.8 NC_006151.1 + 84890 0.66 0.958879
Target:  5'- cGCugGacuuccUgGCCAUGGUGuacGCCGcGCGCGGc -3'
miRNA:   3'- -CGugC------AgCGGUACUAC---UGGU-CGUGCU- -5'
29436 3' -53.8 NC_006151.1 + 66561 0.66 0.958879
Target:  5'- cCGCGcCGCCGUGGac-CCGGCGCu- -3'
miRNA:   3'- cGUGCaGCGGUACUacuGGUCGUGcu -5'
29436 3' -53.8 NC_006151.1 + 120339 0.66 0.958879
Target:  5'- cGCGCG-CGCCcgcGUGGCCGGgcuCGCGGg -3'
miRNA:   3'- -CGUGCaGCGGuacUACUGGUC---GUGCU- -5'
29436 3' -53.8 NC_006151.1 + 131231 0.66 0.958879
Target:  5'- aCGCGUCGCCGUc--GGCCGcCACGu -3'
miRNA:   3'- cGUGCAGCGGUAcuaCUGGUcGUGCu -5'
29436 3' -53.8 NC_006151.1 + 56349 0.66 0.955056
Target:  5'- cGCGCG-CGCCcc----GCCGGCGCGGa -3'
miRNA:   3'- -CGUGCaGCGGuacuacUGGUCGUGCU- -5'
29436 3' -53.8 NC_006151.1 + 64312 0.66 0.955056
Target:  5'- cGCAgCG-CGCCGUGcUGGCCucGCACc- -3'
miRNA:   3'- -CGU-GCaGCGGUACuACUGGu-CGUGcu -5'
29436 3' -53.8 NC_006151.1 + 86482 0.66 0.955056
Target:  5'- cGCACGUggCGCUcugcGUGAUcGGgCGGCGCGu -3'
miRNA:   3'- -CGUGCA--GCGG----UACUA-CUgGUCGUGCu -5'
29436 3' -53.8 NC_006151.1 + 94052 0.66 0.955056
Target:  5'- cGCgGCGUCGCCGcgGAacaGcAUCAGCugGAu -3'
miRNA:   3'- -CG-UGCAGCGGUa-CUa--C-UGGUCGugCU- -5'
29436 3' -53.8 NC_006151.1 + 100069 0.66 0.955056
Target:  5'- cGCGCGgcCGCCGaGGUGcucgaggcGCCGGCGCc- -3'
miRNA:   3'- -CGUGCa-GCGGUaCUAC--------UGGUCGUGcu -5'
29436 3' -53.8 NC_006151.1 + 106425 0.66 0.955056
Target:  5'- uGCGCGUCGCCGacugGACCgAGgGCc- -3'
miRNA:   3'- -CGUGCAGCGGUacuaCUGG-UCgUGcu -5'
29436 3' -53.8 NC_006151.1 + 81863 0.66 0.953461
Target:  5'- cGCGCGUCGCUcucgacgcgcagGAgcGCCGGCGcCGAg -3'
miRNA:   3'- -CGUGCAGCGGua----------CUacUGGUCGU-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.