miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29436 5' -56.4 NC_006151.1 + 119029 0.66 0.905402
Target:  5'- cUCCGAgGCgGGCGccaagGACGGCGGc- -3'
miRNA:   3'- aGGGCUaCGgCCGCua---CUGCUGCUag -5'
29436 5' -56.4 NC_006151.1 + 118969 0.66 0.905402
Target:  5'- gCUCGucgccGCCGGCG-UGuACGACGAg- -3'
miRNA:   3'- aGGGCua---CGGCCGCuAC-UGCUGCUag -5'
29436 5' -56.4 NC_006151.1 + 4210 0.66 0.905402
Target:  5'- gCCCGAgggcgGCCggGGCGcgGGCGggcGCGggCa -3'
miRNA:   3'- aGGGCUa----CGG--CCGCuaCUGC---UGCuaG- -5'
29436 5' -56.4 NC_006151.1 + 82165 0.66 0.905402
Target:  5'- gUCCGA-GCCGaGCGccgggGGCG-CGAUCa -3'
miRNA:   3'- aGGGCUaCGGC-CGCua---CUGCuGCUAG- -5'
29436 5' -56.4 NC_006151.1 + 115108 0.66 0.905402
Target:  5'- gUCCag--GCCGGCGccgccGGCGACGcgCg -3'
miRNA:   3'- -AGGgcuaCGGCCGCua---CUGCUGCuaG- -5'
29436 5' -56.4 NC_006151.1 + 10191 0.66 0.905402
Target:  5'- uUCgCCGGU-CgCGGCGcgGGCGGCGGc- -3'
miRNA:   3'- -AG-GGCUAcG-GCCGCuaCUGCUGCUag -5'
29436 5' -56.4 NC_006151.1 + 60727 0.66 0.905402
Target:  5'- cCCCGAggUGCCGGagcaCGAggcaGCGGCGGcUCg -3'
miRNA:   3'- aGGGCU--ACGGCC----GCUac--UGCUGCU-AG- -5'
29436 5' -56.4 NC_006151.1 + 105489 0.66 0.901664
Target:  5'- -gCCGGUGCCGucgaggaggacgugcGCGAgcucgaccgcaUGGCGGCGcgCa -3'
miRNA:   3'- agGGCUACGGC---------------CGCU-----------ACUGCUGCuaG- -5'
29436 5' -56.4 NC_006151.1 + 72881 0.66 0.899125
Target:  5'- gCCCG-UGUCGGCGAUGA-GcCGcgCc -3'
miRNA:   3'- aGGGCuACGGCCGCUACUgCuGCuaG- -5'
29436 5' -56.4 NC_006151.1 + 106227 0.66 0.899125
Target:  5'- aCCUGAUGgUGGCcgcGGUGGcCGGCGAg- -3'
miRNA:   3'- aGGGCUACgGCCG---CUACU-GCUGCUag -5'
29436 5' -56.4 NC_006151.1 + 5687 0.66 0.899125
Target:  5'- cCCCGccGUGCCGGCGcUG-CGGCc--- -3'
miRNA:   3'- aGGGC--UACGGCCGCuACuGCUGcuag -5'
29436 5' -56.4 NC_006151.1 + 44542 0.66 0.899125
Target:  5'- aUgUGGUGgUGGUGGUGGuCGAUGAUCu -3'
miRNA:   3'- aGgGCUACgGCCGCUACU-GCUGCUAG- -5'
29436 5' -56.4 NC_006151.1 + 78039 0.66 0.899125
Target:  5'- aUCCCGgcGaCgCGGCGcaucugGGCGACGcgCg -3'
miRNA:   3'- -AGGGCuaC-G-GCCGCua----CUGCUGCuaG- -5'
29436 5' -56.4 NC_006151.1 + 68828 0.66 0.898485
Target:  5'- cUCCCGc-GCCGGCGuGUGcucgaggcgccgcGCGACGcGUCc -3'
miRNA:   3'- -AGGGCuaCGGCCGC-UAC-------------UGCUGC-UAG- -5'
29436 5' -56.4 NC_006151.1 + 92166 0.66 0.89262
Target:  5'- -gCCGcgGCCGuGCGcgccGACGGCGAc- -3'
miRNA:   3'- agGGCuaCGGC-CGCua--CUGCUGCUag -5'
29436 5' -56.4 NC_006151.1 + 69965 0.66 0.89262
Target:  5'- cCCCGggGCCGcGCGGgcgcUGcaGCGGCGGc- -3'
miRNA:   3'- aGGGCuaCGGC-CGCU----AC--UGCUGCUag -5'
29436 5' -56.4 NC_006151.1 + 133650 0.66 0.891957
Target:  5'- gUCCGGgugcgagaggcgcUGCCGGCGc-GGCGGCGcgCc -3'
miRNA:   3'- aGGGCU-------------ACGGCCGCuaCUGCUGCuaG- -5'
29436 5' -56.4 NC_006151.1 + 21293 0.66 0.88589
Target:  5'- gCCCG-UGCCGacgaucaccgaGCGGUGGCG-CGAg- -3'
miRNA:   3'- aGGGCuACGGC-----------CGCUACUGCuGCUag -5'
29436 5' -56.4 NC_006151.1 + 16914 0.66 0.88589
Target:  5'- cCCCGgcGCCGGCGc--ACGucgccccgggucACGAUCu -3'
miRNA:   3'- aGGGCuaCGGCCGCuacUGC------------UGCUAG- -5'
29436 5' -56.4 NC_006151.1 + 133153 0.66 0.88589
Target:  5'- aCUCGgcGgCGGCGcgGGCGugGGccUCg -3'
miRNA:   3'- aGGGCuaCgGCCGCuaCUGCugCU--AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.