miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29437 3' -54 NC_006151.1 + 119643 0.66 0.933758
Target:  5'- -aCAGCGACUGCGACgUgcucggcaacuacgCCUcGUACg- -3'
miRNA:   3'- agGUCGCUGAUGCUGgA--------------GGA-CAUGaa -5'
29437 3' -54 NC_006151.1 + 124997 0.66 0.930102
Target:  5'- aCCugGGCGACUGCGuCCUCCgcgagGCc- -3'
miRNA:   3'- aGG--UCGCUGAUGCuGGAGGaca--UGaa -5'
29437 3' -54 NC_006151.1 + 2685 0.67 0.924663
Target:  5'- -gCAGCGGCU-CGGCC-CCgggGUGCa- -3'
miRNA:   3'- agGUCGCUGAuGCUGGaGGa--CAUGaa -5'
29437 3' -54 NC_006151.1 + 72241 0.67 0.913032
Target:  5'- aCCAGCGACUgcccGCGGCCgCCg--ACg- -3'
miRNA:   3'- aGGUCGCUGA----UGCUGGaGGacaUGaa -5'
29437 3' -54 NC_006151.1 + 107050 0.67 0.913032
Target:  5'- gCCGGCGAgc-CGGCCUgCCUcGUGCUg -3'
miRNA:   3'- aGGUCGCUgauGCUGGA-GGA-CAUGAa -5'
29437 3' -54 NC_006151.1 + 105890 0.67 0.913032
Target:  5'- gUCGGCGACaagcugGCGGCCaUgCUGUGCa- -3'
miRNA:   3'- aGGUCGCUGa-----UGCUGG-AgGACAUGaa -5'
29437 3' -54 NC_006151.1 + 53966 0.67 0.900402
Target:  5'- gCCAGCGGCgGCGgcGCCUCCgcggGCg- -3'
miRNA:   3'- aGGUCGCUGaUGC--UGGAGGaca-UGaa -5'
29437 3' -54 NC_006151.1 + 115770 0.68 0.872237
Target:  5'- gUCCAGCaGC-ACGGCCUCCUcggGCg- -3'
miRNA:   3'- -AGGUCGcUGaUGCUGGAGGAca-UGaa -5'
29437 3' -54 NC_006151.1 + 5696 0.68 0.864616
Target:  5'- gCCGGCG-CUGCGGCCaCCgcugcuggcUGUGCUg -3'
miRNA:   3'- aGGUCGCuGAUGCUGGaGG---------ACAUGAa -5'
29437 3' -54 NC_006151.1 + 99279 0.69 0.840455
Target:  5'- gCC-GCcACUGCGACCUCCUcgagcgcgccGUGCUg -3'
miRNA:   3'- aGGuCGcUGAUGCUGGAGGA----------CAUGAa -5'
29437 3' -54 NC_006151.1 + 86003 1.05 0.006586
Target:  5'- cUCCAGCGACUACGACCUCCUGUACUUu -3'
miRNA:   3'- -AGGUCGCUGAUGCUGGAGGACAUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.