miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29437 5' -56.9 NC_006151.1 + 72031 0.66 0.841943
Target:  5'- -----cCCCGCGcGggCGCC-CCGCCg -3'
miRNA:   3'- gauauaGGGCGU-CaaGCGGcGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 139921 0.66 0.841943
Target:  5'- ------gCCGCGGgcucgUCGCCguggGCCGCCg -3'
miRNA:   3'- gauauagGGCGUCa----AGCGG----CGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 130545 0.66 0.841943
Target:  5'- -----cCCCGCgcgagggcGGcgCGCUGCCGCCc -3'
miRNA:   3'- gauauaGGGCG--------UCaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 79621 0.66 0.833733
Target:  5'- -----aCCCGgAGcgcCGCCGUCGCCg -3'
miRNA:   3'- gauauaGGGCgUCaa-GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 56561 0.67 0.825338
Target:  5'- -----gCCUGcCGGgcgacgCGCCGCCGCCc -3'
miRNA:   3'- gauauaGGGC-GUCaa----GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 86724 0.67 0.825338
Target:  5'- ------gUCGCGGcgCGCCGCCGCg- -3'
miRNA:   3'- gauauagGGCGUCaaGCGGCGGCGga -5'
29437 5' -56.9 NC_006151.1 + 105620 0.67 0.825338
Target:  5'- ---gAUCCCGCccaAGUaCGCCGCCuaCCg -3'
miRNA:   3'- gauaUAGGGCG---UCAaGCGGCGGc-GGa -5'
29437 5' -56.9 NC_006151.1 + 118955 0.67 0.825338
Target:  5'- --cUGUCgCUGgAGgcgcUCGUCGCCGCCg -3'
miRNA:   3'- gauAUAG-GGCgUCa---AGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 49573 0.67 0.825338
Target:  5'- -gAUGgagCCCGCGc-UCGCCGgCGCCc -3'
miRNA:   3'- gaUAUa--GGGCGUcaAGCGGCgGCGGa -5'
29437 5' -56.9 NC_006151.1 + 136426 0.67 0.825338
Target:  5'- -----cCCCGCGGcggCGCaCGCCGCg- -3'
miRNA:   3'- gauauaGGGCGUCaa-GCG-GCGGCGga -5'
29437 5' -56.9 NC_006151.1 + 37010 0.67 0.816768
Target:  5'- -----cCCCcCGGgccccCGCCGCCGCCg -3'
miRNA:   3'- gauauaGGGcGUCaa---GCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 37818 0.67 0.816768
Target:  5'- ---cAUCCUGCAGa--GCCuCCGCCg -3'
miRNA:   3'- gauaUAGGGCGUCaagCGGcGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 32634 0.67 0.816768
Target:  5'- ----cUCCCGCuuccccccUCGCCGCCgGCCc -3'
miRNA:   3'- gauauAGGGCGuca-----AGCGGCGG-CGGa -5'
29437 5' -56.9 NC_006151.1 + 101873 0.67 0.816768
Target:  5'- ------aCCGCucc-CGCCGCCGCCg -3'
miRNA:   3'- gauauagGGCGucaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 125387 0.67 0.80803
Target:  5'- ------gCCGCA--UCGCgGCCGCCUg -3'
miRNA:   3'- gauauagGGCGUcaAGCGgCGGCGGA- -5'
29437 5' -56.9 NC_006151.1 + 5380 0.67 0.80803
Target:  5'- --cUGUCuCUGCGGgggCGCC-CCGCCg -3'
miRNA:   3'- gauAUAG-GGCGUCaa-GCGGcGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 61911 0.67 0.806263
Target:  5'- -gAUggCCCacaaGCAGgcgggucuggcCGCCGCCGCCUa -3'
miRNA:   3'- gaUAuaGGG----CGUCaa---------GCGGCGGCGGA- -5'
29437 5' -56.9 NC_006151.1 + 114119 0.67 0.799132
Target:  5'- gCUGcugCCC-CAcGUgCGCCGCCGCCg -3'
miRNA:   3'- -GAUauaGGGcGU-CAaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 15906 0.67 0.799132
Target:  5'- -----cCCCgacGCGGccCGCCGCCGCCc -3'
miRNA:   3'- gauauaGGG---CGUCaaGCGGCGGCGGa -5'
29437 5' -56.9 NC_006151.1 + 8288 0.67 0.799132
Target:  5'- -aGUGUcCCCGCGcGggCGCCGCguccCGCCc -3'
miRNA:   3'- gaUAUA-GGGCGU-CaaGCGGCG----GCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.