miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29438 3' -63.5 NC_006151.1 + 139920 0.65 0.620614
Target:  5'- cGCCGCGGGCucgucgccGuGGGCCGCcguccucGAGuucgGCg -3'
miRNA:   3'- cCGGCGCCUG--------CuCCCGGCG-------CUCca--CG- -5'
29438 3' -63.5 NC_006151.1 + 121696 0.65 0.620614
Target:  5'- cGGCCaugGCGGAgCGGcGGCuCGUGgcgguccuggggcAGGUGCa -3'
miRNA:   3'- -CCGG---CGCCU-GCUcCCG-GCGC-------------UCCACG- -5'
29438 3' -63.5 NC_006151.1 + 49033 0.65 0.620614
Target:  5'- gGGCCG-GGccaggcccACGGGcuGGCCuucagcguccggcGCGGGGUGCc -3'
miRNA:   3'- -CCGGCgCC--------UGCUC--CCGG-------------CGCUCCACG- -5'
29438 3' -63.5 NC_006151.1 + 4319 0.66 0.611928
Target:  5'- gGGCaCGCGGcCGGGcugcgcGGCgGCGaAGGcgGCg -3'
miRNA:   3'- -CCG-GCGCCuGCUC------CCGgCGC-UCCa-CG- -5'
29438 3' -63.5 NC_006151.1 + 50361 0.66 0.611928
Target:  5'- cGCCGCGucuccgccGGCGGGGGCgagaCGCGGGccccGCg -3'
miRNA:   3'- cCGGCGC--------CUGCUCCCG----GCGCUCca--CG- -5'
29438 3' -63.5 NC_006151.1 + 59144 0.66 0.611928
Target:  5'- cGcCCGCGGGCGGGuccaGGCCgGCGucGcGCa -3'
miRNA:   3'- cC-GGCGCCUGCUC----CCGG-CGCucCaCG- -5'
29438 3' -63.5 NC_006151.1 + 121899 0.66 0.611928
Target:  5'- uGGCgcucgcguacgCGCGGGCcgaGGGGGaCCGCGugcuGGggGCg -3'
miRNA:   3'- -CCG-----------GCGCCUG---CUCCC-GGCGCu---CCa-CG- -5'
29438 3' -63.5 NC_006151.1 + 131072 0.66 0.611928
Target:  5'- uGCCGCGGA---GGGCgCGCGAcaGGUa- -3'
miRNA:   3'- cCGGCGCCUgcuCCCG-GCGCU--CCAcg -5'
29438 3' -63.5 NC_006151.1 + 141824 0.66 0.611928
Target:  5'- gGGCCG-GuuCGGGGGUcccgcgcucgaCGCGAGGgGCu -3'
miRNA:   3'- -CCGGCgCcuGCUCCCG-----------GCGCUCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 3718 0.66 0.611928
Target:  5'- cGCCGCucGGGCGcuggguccGGGCCggcgGCGGGGgagcugGCg -3'
miRNA:   3'- cCGGCG--CCUGCu-------CCCGG----CGCUCCa-----CG- -5'
29438 3' -63.5 NC_006151.1 + 52619 0.66 0.611928
Target:  5'- cGUCGCGcAgGAcGGCCGCGAaggccucgaaGGUGCc -3'
miRNA:   3'- cCGGCGCcUgCUcCCGGCGCU----------CCACG- -5'
29438 3' -63.5 NC_006151.1 + 77787 0.66 0.611928
Target:  5'- cGCCGUGaACGAGGccuGCuuCGCGcuGGUGCa -3'
miRNA:   3'- cCGGCGCcUGCUCC---CG--GCGCu-CCACG- -5'
29438 3' -63.5 NC_006151.1 + 95975 0.66 0.611928
Target:  5'- cGCCGCGGcgcagcaggAUGGGGGCCaccucguccGUGAuGGcGCg -3'
miRNA:   3'- cCGGCGCC---------UGCUCCCGG---------CGCU-CCaCG- -5'
29438 3' -63.5 NC_006151.1 + 137297 0.66 0.611928
Target:  5'- cGGCCaUGcGCGGGuuccGCCGCGcGGUGCu -3'
miRNA:   3'- -CCGGcGCcUGCUCc---CGGCGCuCCACG- -5'
29438 3' -63.5 NC_006151.1 + 84763 0.66 0.609035
Target:  5'- cGCCGCcGAgGAGGcggacgcggcgcgcGCCGCcGAGGagGCg -3'
miRNA:   3'- cCGGCGcCUgCUCC--------------CGGCG-CUCCa-CG- -5'
29438 3' -63.5 NC_006151.1 + 21074 0.66 0.60229
Target:  5'- cGGCCagggucaggGCGG-CGAGGaggagccCCGCGGGGaGCc -3'
miRNA:   3'- -CCGG---------CGCCuGCUCCc------GGCGCUCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 29072 0.66 0.60229
Target:  5'- cGCCGCGGGCcccGAGacGGCCGCGGc---- -3'
miRNA:   3'- cCGGCGCCUG---CUC--CCGGCGCUccacg -5'
29438 3' -63.5 NC_006151.1 + 59530 0.66 0.60229
Target:  5'- cGCCGCG--UGAGGGCCcagcGCGcGG-GCa -3'
miRNA:   3'- cCGGCGCcuGCUCCCGG----CGCuCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 84359 0.66 0.60229
Target:  5'- cGGcCCGCGGcggugaucGCGAucGcGGCgCGCGGGGacggGCg -3'
miRNA:   3'- -CC-GGCGCC--------UGCU--C-CCG-GCGCUCCa---CG- -5'
29438 3' -63.5 NC_006151.1 + 13181 0.66 0.60229
Target:  5'- cGCCGCGGcCGucucGGGGCC-CGcGGcGCc -3'
miRNA:   3'- cCGGCGCCuGC----UCCCGGcGCuCCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.