miRNA display CGI


Results 21 - 40 of 373 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29438 3' -63.5 NC_006151.1 + 21074 0.66 0.60229
Target:  5'- cGGCCagggucaggGCGG-CGAGGaggagccCCGCGGGGaGCc -3'
miRNA:   3'- -CCGG---------CGCCuGCUCCc------GGCGCUCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 29072 0.66 0.60229
Target:  5'- cGCCGCGGGCcccGAGacGGCCGCGGc---- -3'
miRNA:   3'- cCGGCGCCUG---CUC--CCGGCGCUccacg -5'
29438 3' -63.5 NC_006151.1 + 59530 0.66 0.60229
Target:  5'- cGCCGCG--UGAGGGCCcagcGCGcGG-GCa -3'
miRNA:   3'- cCGGCGCcuGCUCCCGG----CGCuCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 84359 0.66 0.60229
Target:  5'- cGGcCCGCGGcggugaucGCGAucGcGGCgCGCGGGGacggGCg -3'
miRNA:   3'- -CC-GGCGCC--------UGCU--C-CCG-GCGCUCCa---CG- -5'
29438 3' -63.5 NC_006151.1 + 96582 0.66 0.60229
Target:  5'- cGCCucGCGGcGCGAGGcGCCGgGcgcGGGcGCg -3'
miRNA:   3'- cCGG--CGCC-UGCUCC-CGGCgC---UCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 3910 0.66 0.592672
Target:  5'- aGGCCG-GGcuGCucGGGCCagaGCGGGG-GCa -3'
miRNA:   3'- -CCGGCgCC--UGcuCCCGG---CGCUCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 22265 0.66 0.592672
Target:  5'- gGGUaCGCGGGCGGGGGgaagguCgGCGcGG-GCa -3'
miRNA:   3'- -CCG-GCGCCUGCUCCC------GgCGCuCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 104605 0.66 0.592672
Target:  5'- aGCCGCGGcgcCGAGaucuGCCGCgcgcucgagGAGGUGa -3'
miRNA:   3'- cCGGCGCCu--GCUCc---CGGCG---------CUCCACg -5'
29438 3' -63.5 NC_006151.1 + 117177 0.66 0.592672
Target:  5'- --aCGCGGuagaAGGGCCGCcGGGGgGCg -3'
miRNA:   3'- ccgGCGCCugc-UCCCGGCG-CUCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 139547 0.66 0.592672
Target:  5'- aGGUCGgGGAgCGAGGaGCgGCGcccGGUccGCg -3'
miRNA:   3'- -CCGGCgCCU-GCUCC-CGgCGCu--CCA--CG- -5'
29438 3' -63.5 NC_006151.1 + 115563 0.66 0.592672
Target:  5'- cGcCCGCGGGC--GGGCgCGCGggcAGGUcGCg -3'
miRNA:   3'- cC-GGCGCCUGcuCCCG-GCGC---UCCA-CG- -5'
29438 3' -63.5 NC_006151.1 + 125385 0.66 0.592672
Target:  5'- gGGCCGCau-CGc-GGCCGCcuGGUGCg -3'
miRNA:   3'- -CCGGCGccuGCucCCGGCGcuCCACG- -5'
29438 3' -63.5 NC_006151.1 + 130521 0.66 0.592672
Target:  5'- cGGgCGCGGGCGucGcGUacacgcccccgCGCGAGGgcgGCg -3'
miRNA:   3'- -CCgGCGCCUGCucC-CG-----------GCGCUCCa--CG- -5'
29438 3' -63.5 NC_006151.1 + 141645 0.66 0.592672
Target:  5'- cGGCgGCGcGGCG-GGGCCcCGcGG-GCu -3'
miRNA:   3'- -CCGgCGC-CUGCuCCCGGcGCuCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 136103 0.66 0.586913
Target:  5'- -aUCGCGGuCGGGcGCCGCGGGcugaccucgcucuuuGUGCa -3'
miRNA:   3'- ccGGCGCCuGCUCcCGGCGCUC---------------CACG- -5'
29438 3' -63.5 NC_006151.1 + 88391 0.66 0.58308
Target:  5'- cGuCCGCGG-CGuccGcGGCCGCGAGGc-- -3'
miRNA:   3'- cC-GGCGCCuGCu--C-CCGGCGCUCCacg -5'
29438 3' -63.5 NC_006151.1 + 102924 0.66 0.58308
Target:  5'- cGGCCGCcGAgGAGcGGCUGCGcgcgcuGGacGCg -3'
miRNA:   3'- -CCGGCGcCUgCUC-CCGGCGCu-----CCa-CG- -5'
29438 3' -63.5 NC_006151.1 + 32242 0.66 0.58308
Target:  5'- uGGCCGCGG-CGAccGCCGCcgccgcucucGAGGUu- -3'
miRNA:   3'- -CCGGCGCCuGCUccCGGCG----------CUCCAcg -5'
29438 3' -63.5 NC_006151.1 + 120389 0.66 0.58308
Target:  5'- cGGCCGUGGACGugcucaacGGCcCGCuGGGcuuccUGCu -3'
miRNA:   3'- -CCGGCGCCUGCuc------CCG-GCGcUCC-----ACG- -5'
29438 3' -63.5 NC_006151.1 + 85419 0.66 0.58308
Target:  5'- gGGCuuCGUGGACGAGGucaaccgcGCCGCGgccgccuuccuGGGccGCg -3'
miRNA:   3'- -CCG--GCGCCUGCUCC--------CGGCGC-----------UCCa-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.