miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29438 3' -63.5 NC_006151.1 + 725 0.69 0.403955
Target:  5'- gGGuCCGCGGGCGGGGGCuucCGCuccgcGGcGCc -3'
miRNA:   3'- -CC-GGCGCCUGCUCCCG---GCGcu---CCaCG- -5'
29438 3' -63.5 NC_006151.1 + 1804 0.67 0.545079
Target:  5'- gGGCCGgGGAgGcAGGcGCCgGgGAGGcaaGCg -3'
miRNA:   3'- -CCGGCgCCUgC-UCC-CGG-CgCUCCa--CG- -5'
29438 3' -63.5 NC_006151.1 + 2429 0.72 0.294593
Target:  5'- cGGCCGCaggaGACGAagacGGGCCgcaGCGGGGcGCc -3'
miRNA:   3'- -CCGGCGc---CUGCU----CCCGG---CGCUCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 2601 0.69 0.420356
Target:  5'- aGGCgCGCGGcggcaGCGggaccgggguccGGGGCCcgGCGcGGGUGCu -3'
miRNA:   3'- -CCG-GCGCC-----UGC------------UCCCGG--CGC-UCCACG- -5'
29438 3' -63.5 NC_006151.1 + 3076 0.72 0.263644
Target:  5'- aGGCgGUGGGCGAaGGCgGCGAGcaGCg -3'
miRNA:   3'- -CCGgCGCCUGCUcCCGgCGCUCcaCG- -5'
29438 3' -63.5 NC_006151.1 + 3113 0.7 0.380128
Target:  5'- cGCCGCGGcGCGGGucccaggccGGgCGCGGGGcGCc -3'
miRNA:   3'- cCGGCGCC-UGCUC---------CCgGCGCUCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 3250 0.74 0.204882
Target:  5'- cGGCgGCGGAgCGGGGcGCCGCGGcGcGCg -3'
miRNA:   3'- -CCGgCGCCU-GCUCC-CGGCGCUcCaCG- -5'
29438 3' -63.5 NC_006151.1 + 3392 0.74 0.204882
Target:  5'- gGGCCGCcucgGAGGGCCGCGGcGUGUg -3'
miRNA:   3'- -CCGGCGccugCUCCCGGCGCUcCACG- -5'
29438 3' -63.5 NC_006151.1 + 3428 0.72 0.280017
Target:  5'- cGGCCG-GGACGcGGcggaagccgccgucGGgCGCGGGGUGCu -3'
miRNA:   3'- -CCGGCgCCUGC-UC--------------CCgGCGCUCCACG- -5'
29438 3' -63.5 NC_006151.1 + 3619 0.7 0.349854
Target:  5'- uGGCCGUGGccguccccGCgGAGGGCCGCGccGGagaGCc -3'
miRNA:   3'- -CCGGCGCC--------UG-CUCCCGGCGCu-CCa--CG- -5'
29438 3' -63.5 NC_006151.1 + 3718 0.66 0.611928
Target:  5'- cGCCGCucGGGCGcuggguccGGGCCggcgGCGGGGgagcugGCg -3'
miRNA:   3'- cCGGCG--CCUGCu-------CCCGG----CGCUCCa-----CG- -5'
29438 3' -63.5 NC_006151.1 + 3846 0.66 0.573519
Target:  5'- gGGCC-CGGAgcCGGGgaGGCCG-GAGGggGCg -3'
miRNA:   3'- -CCGGcGCCU--GCUC--CCGGCgCUCCa-CG- -5'
29438 3' -63.5 NC_006151.1 + 3910 0.66 0.592672
Target:  5'- aGGCCG-GGcuGCucGGGCCagaGCGGGG-GCa -3'
miRNA:   3'- -CCGGCgCC--UGcuCCCGG---CGCUCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 3951 0.72 0.269616
Target:  5'- gGGCucCGCGGGCccGGGCCGCGcGGcgGCc -3'
miRNA:   3'- -CCG--GCGCCUGcuCCCGGCGCuCCa-CG- -5'
29438 3' -63.5 NC_006151.1 + 4006 0.75 0.186497
Target:  5'- uGGCCGgGGcgaaGAGGGCCGCGgcguAGGUccagGCg -3'
miRNA:   3'- -CCGGCgCCug--CUCCCGGCGC----UCCA----CG- -5'
29438 3' -63.5 NC_006151.1 + 4042 0.67 0.506082
Target:  5'- cGGCCucGCGGGCGcGGGCCccguccacgcuguaGCGcaccagcggcgccacGGUGCg -3'
miRNA:   3'- -CCGG--CGCCUGCuCCCGG--------------CGCu--------------CCACG- -5'
29438 3' -63.5 NC_006151.1 + 4200 0.72 0.269616
Target:  5'- aGGCagGCGGGCccGAGGGCgGCcGGGGcGCg -3'
miRNA:   3'- -CCGg-CGCCUG--CUCCCGgCG-CUCCaCG- -5'
29438 3' -63.5 NC_006151.1 + 4319 0.66 0.611928
Target:  5'- gGGCaCGCGGcCGGGcugcgcGGCgGCGaAGGcgGCg -3'
miRNA:   3'- -CCG-GCGCCuGCUC------CCGgCGC-UCCa-CG- -5'
29438 3' -63.5 NC_006151.1 + 4356 0.7 0.387966
Target:  5'- cGGaCGCGGGCgcaGAGGGCCuCGAcGGUcGCc -3'
miRNA:   3'- -CCgGCGCCUG---CUCCCGGcGCU-CCA-CG- -5'
29438 3' -63.5 NC_006151.1 + 4603 0.69 0.437152
Target:  5'- aGCCGUGGcCGuGGGgCGCGuGGacccgGCg -3'
miRNA:   3'- cCGGCGCCuGCuCCCgGCGCuCCa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.