miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29438 5' -55.8 NC_006151.1 + 121888 0.66 0.906626
Target:  5'- ---cGCGcuGCGccUGGCGCUCGCgUACGc -3'
miRNA:   3'- uucuUGC--UGC--ACCGCGAGCGgAUGCu -5'
29438 5' -55.8 NC_006151.1 + 91564 0.66 0.906626
Target:  5'- cGGGGCGAUGgcGGCGCgCGCgUGCu- -3'
miRNA:   3'- uUCUUGCUGCa-CCGCGaGCGgAUGcu -5'
29438 5' -55.8 NC_006151.1 + 85055 0.66 0.906626
Target:  5'- --uGACGACcacGGCGCUgcagGCCUGCGGg -3'
miRNA:   3'- uucUUGCUGca-CCGCGAg---CGGAUGCU- -5'
29438 5' -55.8 NC_006151.1 + 77106 0.66 0.906626
Target:  5'- cGGGcGCGGCG-GGCGCgCGCCcACa- -3'
miRNA:   3'- -UUCuUGCUGCaCCGCGaGCGGaUGcu -5'
29438 5' -55.8 NC_006151.1 + 119765 0.66 0.900291
Target:  5'- -cGGACGugGccGGCGCgCGCaucgGCGAg -3'
miRNA:   3'- uuCUUGCugCa-CCGCGaGCGga--UGCU- -5'
29438 5' -55.8 NC_006151.1 + 49568 0.66 0.900291
Target:  5'- -cGGAUGAUGgagcccGCGCUCGCCgGCGc -3'
miRNA:   3'- uuCUUGCUGCac----CGCGAGCGGaUGCu -5'
29438 5' -55.8 NC_006151.1 + 66589 0.66 0.900291
Target:  5'- -cGcGCGGCcgaGGCGCUCgacuucgccGCCUACGAc -3'
miRNA:   3'- uuCuUGCUGca-CCGCGAG---------CGGAUGCU- -5'
29438 5' -55.8 NC_006151.1 + 121924 0.66 0.893719
Target:  5'- gGGGGACcGCGUgcugggGGCGCUgGCCgccgccgGCGAc -3'
miRNA:   3'- -UUCUUGcUGCA------CCGCGAgCGGa------UGCU- -5'
29438 5' -55.8 NC_006151.1 + 123854 0.66 0.893719
Target:  5'- cGGGGCGccgucgcgcuaGCGcugcugcugcUGGCGCUCGCC-GCGGc -3'
miRNA:   3'- uUCUUGC-----------UGC----------ACCGCGAGCGGaUGCU- -5'
29438 5' -55.8 NC_006151.1 + 97995 0.66 0.893719
Target:  5'- -cGGGCGGCGUGGCcGCguaggcggCGCCgGCc- -3'
miRNA:   3'- uuCUUGCUGCACCG-CGa-------GCGGaUGcu -5'
29438 5' -55.8 NC_006151.1 + 22756 0.66 0.886915
Target:  5'- aGGGAGCgGAUGUGGCGgCUCuUCUGCu- -3'
miRNA:   3'- -UUCUUG-CUGCACCGC-GAGcGGAUGcu -5'
29438 5' -55.8 NC_006151.1 + 56940 0.66 0.886915
Target:  5'- cGGGGCGuCGccGGCGCUcagCGCCU-CGAg -3'
miRNA:   3'- uUCUUGCuGCa-CCGCGA---GCGGAuGCU- -5'
29438 5' -55.8 NC_006151.1 + 64546 0.66 0.886915
Target:  5'- cGGGGGCGGCGaggccgUGGCGCgccaGCUcgACGAg -3'
miRNA:   3'- -UUCUUGCUGC------ACCGCGag--CGGa-UGCU- -5'
29438 5' -55.8 NC_006151.1 + 101190 0.66 0.886915
Target:  5'- --cGACGcCGUGGaCGCgUGCCUGCGc -3'
miRNA:   3'- uucUUGCuGCACC-GCGaGCGGAUGCu -5'
29438 5' -55.8 NC_006151.1 + 64460 0.66 0.886915
Target:  5'- cAGGAUGGCGgcgcGCGC-CGCCgcgGCGGg -3'
miRNA:   3'- uUCUUGCUGCac--CGCGaGCGGa--UGCU- -5'
29438 5' -55.8 NC_006151.1 + 82411 0.66 0.886915
Target:  5'- cGAGGGCGgccccgagagGCGcgGGCGCUCGC--GCGGg -3'
miRNA:   3'- -UUCUUGC----------UGCa-CCGCGAGCGgaUGCU- -5'
29438 5' -55.8 NC_006151.1 + 105500 0.66 0.879881
Target:  5'- cGAGGAgGACGUGcGCgaGCUCGaCCgcaugGCGGc -3'
miRNA:   3'- -UUCUUgCUGCAC-CG--CGAGC-GGa----UGCU- -5'
29438 5' -55.8 NC_006151.1 + 136991 0.66 0.879881
Target:  5'- -cGGGCGGCG-GGCGCgcgCGCacgGCGc -3'
miRNA:   3'- uuCUUGCUGCaCCGCGa--GCGga-UGCu -5'
29438 5' -55.8 NC_006151.1 + 104066 0.66 0.879881
Target:  5'- -cGGcCGACGcGGCGCUgCGCCgcgcCGAg -3'
miRNA:   3'- uuCUuGCUGCaCCGCGA-GCGGau--GCU- -5'
29438 5' -55.8 NC_006151.1 + 70499 0.66 0.877004
Target:  5'- ---cGCGugGUGGCGCacaccgacgccacCGCCUGCu- -3'
miRNA:   3'- uucuUGCugCACCGCGa------------GCGGAUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.