miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29438 5' -55.8 NC_006151.1 + 118120 0.67 0.872623
Target:  5'- --uGGCGcugcuCGUGGCGCgcagCGCCgACGAc -3'
miRNA:   3'- uucUUGCu----GCACCGCGa---GCGGaUGCU- -5'
29438 5' -55.8 NC_006151.1 + 68285 0.67 0.872623
Target:  5'- cGGGcgccACGGCGgccaGGCGCgCGCCcACGAc -3'
miRNA:   3'- uUCU----UGCUGCa---CCGCGaGCGGaUGCU- -5'
29438 5' -55.8 NC_006151.1 + 138181 0.67 0.872623
Target:  5'- -cGGACGugGccaUGGCGCcCGUgCUGCGGc -3'
miRNA:   3'- uuCUUGCugC---ACCGCGaGCG-GAUGCU- -5'
29438 5' -55.8 NC_006151.1 + 64504 0.67 0.872623
Target:  5'- -cGGGCGGCG-GGCGCgCGCCg---- -3'
miRNA:   3'- uuCUUGCUGCaCCGCGaGCGGaugcu -5'
29438 5' -55.8 NC_006151.1 + 74511 0.67 0.872623
Target:  5'- -uGAGCGggggcagcaGCGUGGCGUcCGCCaGCGc -3'
miRNA:   3'- uuCUUGC---------UGCACCGCGaGCGGaUGCu -5'
29438 5' -55.8 NC_006151.1 + 119458 0.67 0.872623
Target:  5'- --cGGCGACGUGGaCGCcgUGCgCUACGu -3'
miRNA:   3'- uucUUGCUGCACC-GCGa-GCG-GAUGCu -5'
29438 5' -55.8 NC_006151.1 + 105967 0.67 0.865145
Target:  5'- gGAGAcgGCGAcCGUGGCGggcaugCGCCUcaugaACGAg -3'
miRNA:   3'- -UUCU--UGCU-GCACCGCga----GCGGA-----UGCU- -5'
29438 5' -55.8 NC_006151.1 + 56046 0.67 0.865145
Target:  5'- cGAGGGCGGCGcgcUGaCGCUgCGCCU-CGAg -3'
miRNA:   3'- -UUCUUGCUGC---ACcGCGA-GCGGAuGCU- -5'
29438 5' -55.8 NC_006151.1 + 43003 0.67 0.865145
Target:  5'- gGAGGGCGGCG-GGCGCUUGgCa---- -3'
miRNA:   3'- -UUCUUGCUGCaCCGCGAGCgGaugcu -5'
29438 5' -55.8 NC_006151.1 + 131444 0.67 0.863624
Target:  5'- -cGGGCGGCGggcggaaguccgGGCGCcgcaccUCGCCcACGAg -3'
miRNA:   3'- uuCUUGCUGCa-----------CCGCG------AGCGGaUGCU- -5'
29438 5' -55.8 NC_006151.1 + 17400 0.67 0.863624
Target:  5'- cGGGGCG-CGUGGCGCgcggcagcaggGCCaGCGAg -3'
miRNA:   3'- uUCUUGCuGCACCGCGag---------CGGaUGCU- -5'
29438 5' -55.8 NC_006151.1 + 92646 0.67 0.857454
Target:  5'- ---cGCGACGccggcaaGGCGCUCGcCCUGCu- -3'
miRNA:   3'- uucuUGCUGCa------CCGCGAGC-GGAUGcu -5'
29438 5' -55.8 NC_006151.1 + 109743 0.67 0.857454
Target:  5'- uGGAGCGGaugcCGUGGcCGC-CGCCgUugGAg -3'
miRNA:   3'- uUCUUGCU----GCACC-GCGaGCGG-AugCU- -5'
29438 5' -55.8 NC_006151.1 + 126035 0.67 0.849556
Target:  5'- --cGGCGACGUgGGCGC-CGCCgucgGCa- -3'
miRNA:   3'- uucUUGCUGCA-CCGCGaGCGGa---UGcu -5'
29438 5' -55.8 NC_006151.1 + 104131 0.67 0.849556
Target:  5'- ---cGCGACGUGGCGgCcgaccgCGgCUACGAc -3'
miRNA:   3'- uucuUGCUGCACCGC-Ga-----GCgGAUGCU- -5'
29438 5' -55.8 NC_006151.1 + 65785 0.67 0.841456
Target:  5'- --cGGCGGCGaUGGCGC-CGCCcgGCGc -3'
miRNA:   3'- uucUUGCUGC-ACCGCGaGCGGa-UGCu -5'
29438 5' -55.8 NC_006151.1 + 20518 0.67 0.841456
Target:  5'- cGGGGGCGGCGUGGUGaacacggCGuCCUcgGCGGg -3'
miRNA:   3'- -UUCUUGCUGCACCGCga-----GC-GGA--UGCU- -5'
29438 5' -55.8 NC_006151.1 + 39061 0.67 0.833163
Target:  5'- cGAGGACGugcGCGUGGUGg-UGCuCUACGAc -3'
miRNA:   3'- -UUCUUGC---UGCACCGCgaGCG-GAUGCU- -5'
29438 5' -55.8 NC_006151.1 + 55819 0.67 0.833163
Target:  5'- gAGGAccuguGCGGCGUGGUGUUuaagaagacgCGCCU-CGAg -3'
miRNA:   3'- -UUCU-----UGCUGCACCGCGA----------GCGGAuGCU- -5'
29438 5' -55.8 NC_006151.1 + 61296 0.68 0.816027
Target:  5'- gAAGcuCGACG-GGCGCgUCGCgCUGCa- -3'
miRNA:   3'- -UUCuuGCUGCaCCGCG-AGCG-GAUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.