miRNA display CGI


Results 1 - 20 of 233 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29439 3' -66.9 NC_006151.1 + 102520 0.66 0.437287
Target:  5'- aCCCcGGCGGCGUcuacgaccagacgguGGUggcgcgCGCgCGGGCCCu -3'
miRNA:   3'- -GGGcCCGUCGCA---------------CCG------GCG-GUCCGGGu -5'
29439 3' -66.9 NC_006151.1 + 89548 0.66 0.433925
Target:  5'- gCCGaGGcCGGUGgaGGCCGCgAGGCUg- -3'
miRNA:   3'- gGGC-CC-GUCGCa-CCGGCGgUCCGGgu -5'
29439 3' -66.9 NC_006151.1 + 33264 0.66 0.433925
Target:  5'- gUgGGGCGGUGgcGGCgGCCAucGCCCGa -3'
miRNA:   3'- gGgCCCGUCGCa-CCGgCGGUc-CGGGU- -5'
29439 3' -66.9 NC_006151.1 + 88194 0.66 0.433925
Target:  5'- gUC-GGCGGCGUGGUCGgaCCAGGCg-- -3'
miRNA:   3'- gGGcCCGUCGCACCGGC--GGUCCGggu -5'
29439 3' -66.9 NC_006151.1 + 38220 0.66 0.433925
Target:  5'- gCCCGcGCccGCGaGGCCGCCuGGaCCUAc -3'
miRNA:   3'- -GGGCcCGu-CGCaCCGGCGGuCC-GGGU- -5'
29439 3' -66.9 NC_006151.1 + 63874 0.66 0.428911
Target:  5'- aCCCGcGCAGCGUGuCCGCgucggggcgcucgagCAGGCgCGc -3'
miRNA:   3'- -GGGCcCGUCGCACcGGCG---------------GUCCGgGU- -5'
29439 3' -66.9 NC_006151.1 + 2697 0.66 0.428911
Target:  5'- cCCCGGGguGCaGgcgGGCgaaggaggccucCacgcgggcgaagcagGCCGGGCCCAc -3'
miRNA:   3'- -GGGCCCguCG-Ca--CCG------------G---------------CGGUCCGGGU- -5'
29439 3' -66.9 NC_006151.1 + 36514 0.66 0.425587
Target:  5'- gCCCGGGcCGGCGgcgcGGCCucggacCCcGGCgCCAc -3'
miRNA:   3'- -GGGCCC-GUCGCa---CCGGc-----GGuCCG-GGU- -5'
29439 3' -66.9 NC_006151.1 + 37717 0.66 0.425587
Target:  5'- aUCGGGgAcGCcaUGGCCGcCCAGGaCCCGc -3'
miRNA:   3'- gGGCCCgU-CGc-ACCGGC-GGUCC-GGGU- -5'
29439 3' -66.9 NC_006151.1 + 63607 0.66 0.425587
Target:  5'- -aCGGGCacccucAGCGcGcGCuCGCCcgAGGCCCAg -3'
miRNA:   3'- ggGCCCG------UCGCaC-CG-GCGG--UCCGGGU- -5'
29439 3' -66.9 NC_006151.1 + 120355 0.66 0.425587
Target:  5'- gCCGGGCucGCGgGcGCCuaCCAGcGCCCGg -3'
miRNA:   3'- gGGCCCGu-CGCaC-CGGc-GGUC-CGGGU- -5'
29439 3' -66.9 NC_006151.1 + 3289 0.66 0.425587
Target:  5'- gCCaGGGCGGcCG-GGUcgaaggugagCGCCGGGCgCCAg -3'
miRNA:   3'- gGG-CCCGUC-GCaCCG----------GCGGUCCG-GGU- -5'
29439 3' -66.9 NC_006151.1 + 57073 0.66 0.425587
Target:  5'- aCCGGGcCGGC---GCCGCgCAGGCgCAc -3'
miRNA:   3'- gGGCCC-GUCGcacCGGCG-GUCCGgGU- -5'
29439 3' -66.9 NC_006151.1 + 98568 0.66 0.425587
Target:  5'- gCCGGGCuGCGcaccucGGCCGaguucGGCCCc -3'
miRNA:   3'- gGGCCCGuCGCa-----CCGGCggu--CCGGGu -5'
29439 3' -66.9 NC_006151.1 + 117588 0.66 0.425587
Target:  5'- -aUGGGCcGCGUGgcGCCGCCgcaguagaccguGGGCUCGc -3'
miRNA:   3'- ggGCCCGuCGCAC--CGGCGG------------UCCGGGU- -5'
29439 3' -66.9 NC_006151.1 + 101861 0.66 0.42063
Target:  5'- aCCC-GGCGGCGcaccgcucccgccGCCGCCgcGGGUCCAg -3'
miRNA:   3'- -GGGcCCGUCGCac-----------CGGCGG--UCCGGGU- -5'
29439 3' -66.9 NC_006151.1 + 11331 0.66 0.417345
Target:  5'- gCgCGGGCGauaccGCGcgGGCCGCCcgcGGGCgCUAc -3'
miRNA:   3'- -GgGCCCGU-----CGCa-CCGGCGG---UCCG-GGU- -5'
29439 3' -66.9 NC_006151.1 + 37462 0.66 0.417345
Target:  5'- gCCGcGGCccgcuaccGCGccGCgGCCGGGCCCGu -3'
miRNA:   3'- gGGC-CCGu-------CGCacCGgCGGUCCGGGU- -5'
29439 3' -66.9 NC_006151.1 + 115063 0.66 0.417345
Target:  5'- gUCCGGGgGGCGgcugagcucGGCCGUCAugacgaagucGGCCa- -3'
miRNA:   3'- -GGGCCCgUCGCa--------CCGGCGGU----------CCGGgu -5'
29439 3' -66.9 NC_006151.1 + 121086 0.66 0.417345
Target:  5'- -aCGGGCGGCGg---CGCCGGGCUg- -3'
miRNA:   3'- ggGCCCGUCGCaccgGCGGUCCGGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.