miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29439 5' -57 NC_006151.1 + 99975 0.66 0.869645
Target:  5'- cGCCGCGCUcGUGgcggCgcuggcgcgcgaggaCCUGACGGUGGc -3'
miRNA:   3'- -CGGCGCGAcUACa---G---------------GGGCUGCUACUu -5'
29439 5' -57 NC_006151.1 + 70126 0.66 0.866673
Target:  5'- cCCGCGCgccgcagGAggggGUCCggGACGAUGAc -3'
miRNA:   3'- cGGCGCGa------CUa---CAGGggCUGCUACUu -5'
29439 5' -57 NC_006151.1 + 27576 0.66 0.866673
Target:  5'- gGCCGgGUgGGUGggcgaggcUCCCCGACGccGAc -3'
miRNA:   3'- -CGGCgCGaCUAC--------AGGGGCUGCuaCUu -5'
29439 5' -57 NC_006151.1 + 21441 0.66 0.866673
Target:  5'- cGCgGCGUggGGUGgcCCCCGGCGGcgUGGu -3'
miRNA:   3'- -CGgCGCGa-CUACa-GGGGCUGCU--ACUu -5'
29439 5' -57 NC_006151.1 + 77295 0.66 0.859096
Target:  5'- uGCCGCGCcGcGUGUgCCCGcCGccAUGGAg -3'
miRNA:   3'- -CGGCGCGaC-UACAgGGGCuGC--UACUU- -5'
29439 5' -57 NC_006151.1 + 95451 0.66 0.843333
Target:  5'- cGCCGCGC--GUGUCCgUGugGAa--- -3'
miRNA:   3'- -CGGCGCGacUACAGGgGCugCUacuu -5'
29439 5' -57 NC_006151.1 + 118003 0.66 0.843333
Target:  5'- cGCCGCGuCUcGUcucaCCCgCGACGAUGGAg -3'
miRNA:   3'- -CGGCGC-GAcUAca--GGG-GCUGCUACUU- -5'
29439 5' -57 NC_006151.1 + 99478 0.66 0.83516
Target:  5'- gGCgGCGCUGggGcUCCCCGagaaggGCG-UGGAg -3'
miRNA:   3'- -CGgCGCGACuaC-AGGGGC------UGCuACUU- -5'
29439 5' -57 NC_006151.1 + 130686 0.67 0.826803
Target:  5'- cGCgGCGCagGAUGUCcgggggCCCGACGGg--- -3'
miRNA:   3'- -CGgCGCGa-CUACAG------GGGCUGCUacuu -5'
29439 5' -57 NC_006151.1 + 117649 0.67 0.809565
Target:  5'- cGCCGCGCUGcuccggggcGUCCaggcaCCGcggcGCGAUGAAc -3'
miRNA:   3'- -CGGCGCGACua-------CAGG-----GGC----UGCUACUU- -5'
29439 5' -57 NC_006151.1 + 56579 0.67 0.808686
Target:  5'- cGCCGCccgacggGCUGGUGcggacgcgCCCCGGCGGc--- -3'
miRNA:   3'- -CGGCG-------CGACUACa-------GGGGCUGCUacuu -5'
29439 5' -57 NC_006151.1 + 117456 0.67 0.791684
Target:  5'- uCCGCGCUGgcGUacucggugcUCUCGACGAUGu- -3'
miRNA:   3'- cGGCGCGACuaCA---------GGGGCUGCUACuu -5'
29439 5' -57 NC_006151.1 + 87637 0.67 0.782524
Target:  5'- cGCCGacaucuucgucuCGCagaUGAUGUCCCa-GCGAUGAGg -3'
miRNA:   3'- -CGGC------------GCG---ACUACAGGGgcUGCUACUU- -5'
29439 5' -57 NC_006151.1 + 69214 0.67 0.782524
Target:  5'- cCCGCGCcGGccgCCCCaGGCGGUGGAg -3'
miRNA:   3'- cGGCGCGaCUacaGGGG-CUGCUACUU- -5'
29439 5' -57 NC_006151.1 + 3967 0.68 0.744624
Target:  5'- gGCCGCGCgGcgG-CCUCGGCGAg--- -3'
miRNA:   3'- -CGGCGCGaCuaCaGGGGCUGCUacuu -5'
29439 5' -57 NC_006151.1 + 60360 0.68 0.734879
Target:  5'- uGCgGCGCgucGAagcUGagCCCGACGGUGAc -3'
miRNA:   3'- -CGgCGCGa--CU---ACagGGGCUGCUACUu -5'
29439 5' -57 NC_006151.1 + 98971 0.68 0.734879
Target:  5'- gGCgGCGCUGGUG--CCCGugGgcGAGg -3'
miRNA:   3'- -CGgCGCGACUACagGGGCugCuaCUU- -5'
29439 5' -57 NC_006151.1 + 103414 0.68 0.734879
Target:  5'- uGCCaCGCUGGg---CCCGGCGGUGGAc -3'
miRNA:   3'- -CGGcGCGACUacagGGGCUGCUACUU- -5'
29439 5' -57 NC_006151.1 + 64817 0.68 0.725046
Target:  5'- aGCCGgcggccaGCUccuccucgagGAUGUCCCCGGCGAg--- -3'
miRNA:   3'- -CGGCg------CGA----------CUACAGGGGCUGCUacuu -5'
29439 5' -57 NC_006151.1 + 36472 0.69 0.715132
Target:  5'- cCCGCGgaGAUgGUCCCCcGCGAggggGGAc -3'
miRNA:   3'- cGGCGCgaCUA-CAGGGGcUGCUa---CUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.