miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29439 5' -57 NC_006151.1 + 3967 0.68 0.744624
Target:  5'- gGCCGCGCgGcgG-CCUCGGCGAg--- -3'
miRNA:   3'- -CGGCGCGaCuaCaGGGGCUGCUacuu -5'
29439 5' -57 NC_006151.1 + 10508 0.7 0.623796
Target:  5'- cGCCGcCGCaGGcgcGUCCCCGGCGcgGGc -3'
miRNA:   3'- -CGGC-GCGaCUa--CAGGGGCUGCuaCUu -5'
29439 5' -57 NC_006151.1 + 21441 0.66 0.866673
Target:  5'- cGCgGCGUggGGUGgcCCCCGGCGGcgUGGu -3'
miRNA:   3'- -CGgCGCGa-CUACa-GGGGCUGCU--ACUu -5'
29439 5' -57 NC_006151.1 + 23406 0.72 0.542775
Target:  5'- cGCCaGCGCUGGUgGUCgCCGGCcGUGGGg -3'
miRNA:   3'- -CGG-CGCGACUA-CAGgGGCUGcUACUU- -5'
29439 5' -57 NC_006151.1 + 27576 0.66 0.866673
Target:  5'- gGCCGgGUgGGUGggcgaggcUCCCCGACGccGAc -3'
miRNA:   3'- -CGGCgCGaCUAC--------AGGGGCUGCuaCUu -5'
29439 5' -57 NC_006151.1 + 30663 0.71 0.556765
Target:  5'- gGCCGCGCUGGUuccgggaagccucCCCCGGCGGgcgGGGg -3'
miRNA:   3'- -CGGCGCGACUAca-----------GGGGCUGCUa--CUU- -5'
29439 5' -57 NC_006151.1 + 36472 0.69 0.715132
Target:  5'- cCCGCGgaGAUgGUCCCCcGCGAggggGGAc -3'
miRNA:   3'- cGGCGCgaCUA-CAGGGGcUGCUa---CUU- -5'
29439 5' -57 NC_006151.1 + 56579 0.67 0.808686
Target:  5'- cGCCGCccgacggGCUGGUGcggacgcgCCCCGGCGGc--- -3'
miRNA:   3'- -CGGCG-------CGACUACa-------GGGGCUGCUacuu -5'
29439 5' -57 NC_006151.1 + 60360 0.68 0.734879
Target:  5'- uGCgGCGCgucGAagcUGagCCCGACGGUGAc -3'
miRNA:   3'- -CGgCGCGa--CU---ACagGGGCUGCUACUu -5'
29439 5' -57 NC_006151.1 + 62391 0.71 0.556765
Target:  5'- cGCCGUccuggcgguccugucGCUGAUcgCCCUGGCGAUGAu -3'
miRNA:   3'- -CGGCG---------------CGACUAcaGGGGCUGCUACUu -5'
29439 5' -57 NC_006151.1 + 64817 0.68 0.725046
Target:  5'- aGCCGgcggccaGCUccuccucgagGAUGUCCCCGGCGAg--- -3'
miRNA:   3'- -CGGCg------CGA----------CUACAGGGGCUGCUacuu -5'
29439 5' -57 NC_006151.1 + 69214 0.67 0.782524
Target:  5'- cCCGCGCcGGccgCCCCaGGCGGUGGAg -3'
miRNA:   3'- cGGCGCGaCUacaGGGG-CUGCUACUU- -5'
29439 5' -57 NC_006151.1 + 70126 0.66 0.866673
Target:  5'- cCCGCGCgccgcagGAggggGUCCggGACGAUGAc -3'
miRNA:   3'- cGGCGCGa------CUa---CAGGggCUGCUACUu -5'
29439 5' -57 NC_006151.1 + 77295 0.66 0.859096
Target:  5'- uGCCGCGCcGcGUGUgCCCGcCGccAUGGAg -3'
miRNA:   3'- -CGGCGCGaC-UACAgGGGCuGC--UACUU- -5'
29439 5' -57 NC_006151.1 + 81134 0.69 0.695102
Target:  5'- cGCgGCGCUGucGUUgCUGACGAUGGc -3'
miRNA:   3'- -CGgCGCGACuaCAGgGGCUGCUACUu -5'
29439 5' -57 NC_006151.1 + 81353 0.69 0.685004
Target:  5'- cGCCGCGCccGggG-CCCCGGCGGg--- -3'
miRNA:   3'- -CGGCGCGa-CuaCaGGGGCUGCUacuu -5'
29439 5' -57 NC_006151.1 + 83475 1.08 0.002335
Target:  5'- cGCCGCGCUGAUGUCCCCGACGAUGAAg -3'
miRNA:   3'- -CGGCGCGACUACAGGGGCUGCUACUU- -5'
29439 5' -57 NC_006151.1 + 85353 0.76 0.341215
Target:  5'- cGCCGCGCUGGcgcgccugcgcgugGUCCCCGGCGc-GAAc -3'
miRNA:   3'- -CGGCGCGACUa-------------CAGGGGCUGCuaCUU- -5'
29439 5' -57 NC_006151.1 + 86186 0.72 0.513211
Target:  5'- cGCCGCGCUGc---CCCCGGCGGg--- -3'
miRNA:   3'- -CGGCGCGACuacaGGGGCUGCUacuu -5'
29439 5' -57 NC_006151.1 + 87637 0.67 0.782524
Target:  5'- cGCCGacaucuucgucuCGCagaUGAUGUCCCa-GCGAUGAGg -3'
miRNA:   3'- -CGGC------------GCG---ACUACAGGGgcUGCUACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.