miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29440 3' -57.5 NC_006151.1 + 124080 0.66 0.889802
Target:  5'- uGCGCGCGGccgcgaccgaGCGGGaccgcuucuacgucUGcCCGcCGCCg -3'
miRNA:   3'- gCGUGUGCC----------UGCCCa-------------ACaGGCaGCGG- -5'
29440 3' -57.5 NC_006151.1 + 16874 0.66 0.887146
Target:  5'- gGUACAUc-GCGGGgcgcgcucgcGUCCGUUGCCg -3'
miRNA:   3'- gCGUGUGccUGCCCaa--------CAGGCAGCGG- -5'
29440 3' -57.5 NC_006151.1 + 31714 0.66 0.887146
Target:  5'- gGCGCcggGCGGaACGGGgcGUggagaggcgcCCG-CGCCg -3'
miRNA:   3'- gCGUG---UGCC-UGCCCaaCA----------GGCaGCGG- -5'
29440 3' -57.5 NC_006151.1 + 61755 0.66 0.887146
Target:  5'- uGUACGCGGucGCGGGgg--CCGUggUGCUg -3'
miRNA:   3'- gCGUGUGCC--UGCCCaacaGGCA--GCGG- -5'
29440 3' -57.5 NC_006151.1 + 66297 0.66 0.887146
Target:  5'- gCGCACGCGG-CGcucccGGcgGUCCGagGCg -3'
miRNA:   3'- -GCGUGUGCCuGC-----CCaaCAGGCagCGg -5'
29440 3' -57.5 NC_006151.1 + 97818 0.66 0.887146
Target:  5'- uGCGC-CGGuCGcGGUaGUUgGUCGUCa -3'
miRNA:   3'- gCGUGuGCCuGC-CCAaCAGgCAGCGG- -5'
29440 3' -57.5 NC_006151.1 + 138718 0.66 0.887146
Target:  5'- gCGCGcCGCGcGCGGGUcgUGUaCGcgCGCCg -3'
miRNA:   3'- -GCGU-GUGCcUGCCCA--ACAgGCa-GCGG- -5'
29440 3' -57.5 NC_006151.1 + 77464 0.66 0.887146
Target:  5'- aCGCuGCGCGGGaacgcgccCGGGaaccgcgUCGUCGCCa -3'
miRNA:   3'- -GCG-UGUGCCU--------GCCCaaca---GGCAGCGG- -5'
29440 3' -57.5 NC_006151.1 + 62660 0.66 0.884456
Target:  5'- uCGCACAUGGuccucucgUGUCCGucucUCGCCg -3'
miRNA:   3'- -GCGUGUGCCugccca--ACAGGC----AGCGG- -5'
29440 3' -57.5 NC_006151.1 + 28520 0.66 0.880356
Target:  5'- gGCcCGCgGGACGGGc-GUCCGggaccgGCCa -3'
miRNA:   3'- gCGuGUG-CCUGCCCaaCAGGCag----CGG- -5'
29440 3' -57.5 NC_006151.1 + 28801 0.66 0.880356
Target:  5'- gGCcCGCgGGACGGGc-GUCCGggaccgGCCa -3'
miRNA:   3'- gCGuGUG-CCUGCCCaaCAGGCag----CGG- -5'
29440 3' -57.5 NC_006151.1 + 104576 0.66 0.880356
Target:  5'- gGCGCGCGGACGugcugcaggccGGcgGcagCCGcggCGCCg -3'
miRNA:   3'- gCGUGUGCCUGC-----------CCaaCa--GGCa--GCGG- -5'
29440 3' -57.5 NC_006151.1 + 84430 0.66 0.880356
Target:  5'- gGCGCGCGGcggcGCGcGGcccaUGUCCccccgCGCCa -3'
miRNA:   3'- gCGUGUGCC----UGC-CCa---ACAGGca---GCGG- -5'
29440 3' -57.5 NC_006151.1 + 19589 0.66 0.875478
Target:  5'- uCGCAgcCGCGGACGGGcaggaacguccagaUcccggccaccacgGcgCCGUCGCCg -3'
miRNA:   3'- -GCGU--GUGCCUGCCC--------------Aa------------Ca-GGCAGCGG- -5'
29440 3' -57.5 NC_006151.1 + 50989 0.66 0.873356
Target:  5'- cCGCGCACGcGCGG-----CCGUCGUCg -3'
miRNA:   3'- -GCGUGUGCcUGCCcaacaGGCAGCGG- -5'
29440 3' -57.5 NC_006151.1 + 131118 0.66 0.873356
Target:  5'- gGC-CGCGGcGCGGGagG-CCGcggCGCCg -3'
miRNA:   3'- gCGuGUGCC-UGCCCaaCaGGCa--GCGG- -5'
29440 3' -57.5 NC_006151.1 + 101770 0.66 0.872645
Target:  5'- cCGCcgACGCGGGgcccCGGGgccaucccguccucgCCGUCGCCc -3'
miRNA:   3'- -GCG--UGUGCCU----GCCCaaca-----------GGCAGCGG- -5'
29440 3' -57.5 NC_006151.1 + 91686 0.66 0.871216
Target:  5'- gGUGCGCgugGGugGGGUggcgGUCCagguccucgaggccGUCGUCg -3'
miRNA:   3'- gCGUGUG---CCugCCCAa---CAGG--------------CAGCGG- -5'
29440 3' -57.5 NC_006151.1 + 57145 0.66 0.86615
Target:  5'- gCGCACGCGG-CGGGggcgagggcGUCCcccggCGCg -3'
miRNA:   3'- -GCGUGUGCCuGCCCaa-------CAGGca---GCGg -5'
29440 3' -57.5 NC_006151.1 + 34134 0.66 0.86615
Target:  5'- -cCAC-CGGGCGGG--GUCCG-CGCUc -3'
miRNA:   3'- gcGUGuGCCUGCCCaaCAGGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.