miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29440 5' -55.4 NC_006151.1 + 42782 0.66 0.934995
Target:  5'- uGGGACgugacUGGGCGgggugGCGGgacgcgucgaggUCGUGUGGg -3'
miRNA:   3'- -CCCUGa----GCCCGUa----CGCUa-----------GGCACAUC- -5'
29440 5' -55.4 NC_006151.1 + 10940 0.66 0.930968
Target:  5'- aGGG---UGGGCGcGCGuGUCCGUGUGa -3'
miRNA:   3'- -CCCugaGCCCGUaCGC-UAGGCACAUc -5'
29440 5' -55.4 NC_006151.1 + 122486 0.66 0.930968
Target:  5'- gGGGACgCGGGCGagacgGCGcgCCGg---- -3'
miRNA:   3'- -CCCUGaGCCCGUa----CGCuaGGCacauc -5'
29440 5' -55.4 NC_006151.1 + 8489 0.66 0.930968
Target:  5'- cGGACggggCGGGCGgggaggGUGucGUCUGUGUGu -3'
miRNA:   3'- cCCUGa---GCCCGUa-----CGC--UAGGCACAUc -5'
29440 5' -55.4 NC_006151.1 + 5266 0.66 0.925719
Target:  5'- gGGGGCggaGGGCGaGCGggCCGgggAGa -3'
miRNA:   3'- -CCCUGag-CCCGUaCGCuaGGCacaUC- -5'
29440 5' -55.4 NC_006151.1 + 78393 0.66 0.924098
Target:  5'- gGGGGCggccacggcggcucUCGGGCc-GCGAgcgCCGUGg-- -3'
miRNA:   3'- -CCCUG--------------AGCCCGuaCGCUa--GGCACauc -5'
29440 5' -55.4 NC_006151.1 + 99192 0.66 0.920232
Target:  5'- uGGACgccaCGGGCGUGUGGgaggCgGUGcAGg -3'
miRNA:   3'- cCCUGa---GCCCGUACGCUa---GgCACaUC- -5'
29440 5' -55.4 NC_006151.1 + 71572 0.66 0.914506
Target:  5'- gGGGACgggCGGGCAUccuccGCGGgcgCCGcGUc- -3'
miRNA:   3'- -CCCUGa--GCCCGUA-----CGCUa--GGCaCAuc -5'
29440 5' -55.4 NC_006151.1 + 8247 0.66 0.914506
Target:  5'- aGGGC-CGGGCcgGCGcgCCGg---- -3'
miRNA:   3'- cCCUGaGCCCGuaCGCuaGGCacauc -5'
29440 5' -55.4 NC_006151.1 + 2630 0.67 0.895915
Target:  5'- cGGGGCcCGGcGCggGUGcucaCCGUGUAGc -3'
miRNA:   3'- -CCCUGaGCC-CGuaCGCua--GGCACAUC- -5'
29440 5' -55.4 NC_006151.1 + 21482 0.67 0.882368
Target:  5'- -cGGCUCGGGCAgGCGG-CCGgg-GGg -3'
miRNA:   3'- ccCUGAGCCCGUaCGCUaGGCacaUC- -5'
29440 5' -55.4 NC_006151.1 + 91757 0.67 0.87526
Target:  5'- cGGGCUCGGGCggGCGGUgUGc---- -3'
miRNA:   3'- cCCUGAGCCCGuaCGCUAgGCacauc -5'
29440 5' -55.4 NC_006151.1 + 41571 0.68 0.867935
Target:  5'- gGGGcagGCUCGGcGCGccgaUGCGAUCCGcGg-- -3'
miRNA:   3'- -CCC---UGAGCC-CGU----ACGCUAGGCaCauc -5'
29440 5' -55.4 NC_006151.1 + 35421 0.68 0.867935
Target:  5'- gGGGGC-CGGGCAUGCaaauGGUCCu----- -3'
miRNA:   3'- -CCCUGaGCCCGUACG----CUAGGcacauc -5'
29440 5' -55.4 NC_006151.1 + 20453 0.68 0.860398
Target:  5'- cGGGGCUCGGGgGUGgcgcCGGUCCcccgGGg -3'
miRNA:   3'- -CCCUGAGCCCgUAC----GCUAGGcacaUC- -5'
29440 5' -55.4 NC_006151.1 + 36194 0.68 0.83658
Target:  5'- cGGGGCUCGGGCGa--GAUCgugGUGcUAGa -3'
miRNA:   3'- -CCCUGAGCCCGUacgCUAGg--CAC-AUC- -5'
29440 5' -55.4 NC_006151.1 + 95433 0.69 0.811093
Target:  5'- uGGACguggcgaGGGCGgcgccGCGcguGUCCGUGUGGa -3'
miRNA:   3'- cCCUGag-----CCCGUa----CGC---UAGGCACAUC- -5'
29440 5' -55.4 NC_006151.1 + 33225 0.7 0.755979
Target:  5'- cGGGGCgccccggCGGGCGggagGgGGUCCGggggaaggGUGGg -3'
miRNA:   3'- -CCCUGa------GCCCGUa---CgCUAGGCa-------CAUC- -5'
29440 5' -55.4 NC_006151.1 + 141273 0.7 0.746359
Target:  5'- cGGGGcCUCGgcGGC-UGCGGUCCGaugacgGUGGg -3'
miRNA:   3'- -CCCU-GAGC--CCGuACGCUAGGCa-----CAUC- -5'
29440 5' -55.4 NC_006151.1 + 132582 0.72 0.666567
Target:  5'- cGGGACUCGcGGCAUGgGcUCCGc---- -3'
miRNA:   3'- -CCCUGAGC-CCGUACgCuAGGCacauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.