miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29441 5' -58.6 NC_006151.1 + 5249 0.66 0.770967
Target:  5'- --gCgGCGgcGGGgGCCCGG-GGGGc -3'
miRNA:   3'- uuaGgUGCaaUCCgCGGGCCaCCCUu -5'
29441 5' -58.6 NC_006151.1 + 5090 0.66 0.73232
Target:  5'- --gCCGCGgcGGGCGCCggcggagaCGGUGGcGGc -3'
miRNA:   3'- uuaGGUGCaaUCCGCGG--------GCCACC-CUu -5'
29441 5' -58.6 NC_006151.1 + 122457 0.66 0.722415
Target:  5'- cGUCCACGgcggcggcGGGCGCCgaGGccgGGGAc -3'
miRNA:   3'- uUAGGUGCaa------UCCGCGGg-CCa--CCCUu -5'
29441 5' -58.6 NC_006151.1 + 4063 0.67 0.712433
Target:  5'- cGUCCACGcUGuagcgcaccagcGGCGCCaCGGUGcGGGc -3'
miRNA:   3'- uUAGGUGCaAU------------CCGCGG-GCCAC-CCUu -5'
29441 5' -58.6 NC_006151.1 + 64860 0.67 0.69227
Target:  5'- -cUCgGCGgaGGGCcgcuGCCCGGcGGGAGc -3'
miRNA:   3'- uuAGgUGCaaUCCG----CGGGCCaCCCUU- -5'
29441 5' -58.6 NC_006151.1 + 78714 0.67 0.682107
Target:  5'- --gCCGCGac-GGCGCCC-GUGGGGc -3'
miRNA:   3'- uuaGGUGCaauCCGCGGGcCACCCUu -5'
29441 5' -58.6 NC_006151.1 + 28522 0.67 0.680069
Target:  5'- --cCCGCGggacGGGCGUCCGGgaccggccaaugGGGGAg -3'
miRNA:   3'- uuaGGUGCaa--UCCGCGGGCCa-----------CCCUU- -5'
29441 5' -58.6 NC_006151.1 + 138629 0.67 0.671903
Target:  5'- --gCCGCcggGGGCGCgCCGGacUGGGAGg -3'
miRNA:   3'- uuaGGUGcaaUCCGCG-GGCC--ACCCUU- -5'
29441 5' -58.6 NC_006151.1 + 132632 0.68 0.641131
Target:  5'- cGUCCGcCGUc-GGCGCCCGGaccUGGGc- -3'
miRNA:   3'- uUAGGU-GCAauCCGCGGGCC---ACCCuu -5'
29441 5' -58.6 NC_006151.1 + 41101 0.68 0.630848
Target:  5'- uGGUCC-CGgcGGGU-CCUGGUGGGAGg -3'
miRNA:   3'- -UUAGGuGCaaUCCGcGGGCCACCCUU- -5'
29441 5' -58.6 NC_006151.1 + 73312 0.68 0.597988
Target:  5'- cGUCCGCGUccagcaugggcgGGGCGCCgCGcGUGGcGAAg -3'
miRNA:   3'- uUAGGUGCAa-----------UCCGCGG-GC-CACC-CUU- -5'
29441 5' -58.6 NC_006151.1 + 22076 0.69 0.588782
Target:  5'- --gCCACG-UGGGCGCgguacgugggccgCCGGUGGGc- -3'
miRNA:   3'- uuaGGUGCaAUCCGCG-------------GGCCACCCuu -5'
29441 5' -58.6 NC_006151.1 + 131095 0.71 0.443399
Target:  5'- uAGUCCACGUcggcgGGGgGCCCGGccgcggcgcGGGAGg -3'
miRNA:   3'- -UUAGGUGCAa----UCCgCGGGCCa--------CCCUU- -5'
29441 5' -58.6 NC_006151.1 + 91172 0.71 0.434336
Target:  5'- --cUCACGUcGGGCGCCCGcGaGGGGAg -3'
miRNA:   3'- uuaGGUGCAaUCCGCGGGC-CaCCCUU- -5'
29441 5' -58.6 NC_006151.1 + 82615 0.72 0.382314
Target:  5'- --cCCGCGcgcGGGCGCCgCGGUGGGc- -3'
miRNA:   3'- uuaGGUGCaa-UCCGCGG-GCCACCCuu -5'
29441 5' -58.6 NC_006151.1 + 80401 1.04 0.002887
Target:  5'- cAAUCCACGUUAGGCGCCCGGUGGGAAa -3'
miRNA:   3'- -UUAGGUGCAAUCCGCGGGCCACCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.