miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29442 3' -53.4 NC_006151.1 + 109711 0.66 0.965511
Target:  5'- cGAGACCCC--GGcGACCCCgcugcgcucgccgcUGGAGc -3'
miRNA:   3'- -CUCUGGGGaaUCuCUGGGGa-------------AUCUCu -5'
29442 3' -53.4 NC_006151.1 + 107872 0.66 0.956884
Target:  5'- -cGGCCCCcccGGAGGCCCCccAGGc- -3'
miRNA:   3'- cuCUGGGGaa-UCUCUGGGGaaUCUcu -5'
29442 3' -53.4 NC_006151.1 + 109093 0.66 0.95289
Target:  5'- -cGGCCCC--GGAGGCCCagu-GAGGc -3'
miRNA:   3'- cuCUGGGGaaUCUCUGGGgaauCUCU- -5'
29442 3' -53.4 NC_006151.1 + 40098 0.67 0.934466
Target:  5'- -cGGCCCCggcgaggacGGGGACUCUgUGGAGAu -3'
miRNA:   3'- cuCUGGGGaa-------UCUCUGGGGaAUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 18754 0.67 0.934466
Target:  5'- cGGGGCCCCacGGGGugCCC--GGGGc -3'
miRNA:   3'- -CUCUGGGGaaUCUCugGGGaaUCUCu -5'
29442 3' -53.4 NC_006151.1 + 15013 0.67 0.929235
Target:  5'- cGGGCCCCcgcccGACCCCgaGGAGGu -3'
miRNA:   3'- cUCUGGGGaaucuCUGGGGaaUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 7566 0.67 0.929235
Target:  5'- cGAGACCCC---GAGACCCCc------ -3'
miRNA:   3'- -CUCUGGGGaauCUCUGGGGaaucucu -5'
29442 3' -53.4 NC_006151.1 + 99697 0.67 0.923752
Target:  5'- -cGGCgCCggGGAGACgCCCaUGGAGGc -3'
miRNA:   3'- cuCUGgGGaaUCUCUG-GGGaAUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 110007 0.68 0.905793
Target:  5'- gGAGGCgCCCgagcuGGACCCCUggggccUGGAGGa -3'
miRNA:   3'- -CUCUG-GGGaauc-UCUGGGGA------AUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 138864 0.68 0.892579
Target:  5'- -cGACCCCgccgAGuuccuGACCCC--GGAGAa -3'
miRNA:   3'- cuCUGGGGaa--UCu----CUGGGGaaUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 36457 0.69 0.870965
Target:  5'- -cGGCCCCUcGGcaGCCCCgcGGAGAu -3'
miRNA:   3'- cuCUGGGGAaUCucUGGGGaaUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 106815 0.69 0.870965
Target:  5'- cGGGGCCCCgcUGGuGAUCgCCaUGGAGAa -3'
miRNA:   3'- -CUCUGGGGa-AUCuCUGG-GGaAUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 8190 0.69 0.855416
Target:  5'- cGGGACCCC--GGGGGCgCUCcgGGAGAc -3'
miRNA:   3'- -CUCUGGGGaaUCUCUG-GGGaaUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 136632 0.7 0.821819
Target:  5'- cGGACCCCgcggcgcccgUGGGGcgcucGCCCCUcGGGGAg -3'
miRNA:   3'- cUCUGGGGa---------AUCUC-----UGGGGAaUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 124024 0.7 0.794684
Target:  5'- -cGGCCCCUcGGAGGCCCCcgacGGcGAg -3'
miRNA:   3'- cuCUGGGGAaUCUCUGGGGaa--UCuCU- -5'
29442 3' -53.4 NC_006151.1 + 107157 0.71 0.775804
Target:  5'- -cGACCCgCUgcugcgGGAGAuCCCCUuccUGGAGAc -3'
miRNA:   3'- cuCUGGG-GAa-----UCUCU-GGGGA---AUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 114250 0.72 0.705975
Target:  5'- cGGGACCCCUcGGAGcGCgCCCUcgaGGAGGu -3'
miRNA:   3'- -CUCUGGGGAaUCUC-UG-GGGAa--UCUCU- -5'
29442 3' -53.4 NC_006151.1 + 7597 0.79 0.330683
Target:  5'- cGAGACCCCU--GAGACCCCc--GAGAc -3'
miRNA:   3'- -CUCUGGGGAauCUCUGGGGaauCUCU- -5'
29442 3' -53.4 NC_006151.1 + 79962 1.09 0.004506
Target:  5'- aGAGACCCCUUAGAGACCCCUUAGAGAc -3'
miRNA:   3'- -CUCUGGGGAAUCUCUGGGGAAUCUCU- -5'
29442 3' -53.4 NC_006151.1 + 79929 1.09 0.004506
Target:  5'- aGAGACCCCUUAGAGACCCCUUAGAGAc -3'
miRNA:   3'- -CUCUGGGGAAUCUCUGGGGAAUCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.