miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29442 5' -57.1 NC_006151.1 + 133459 0.66 0.884779
Target:  5'- uGGCCCCggucGAGGCCCgCgaggcggCCgCGGGc -3'
miRNA:   3'- -CUGGGGaau-CUCUGGG-Gaa-----GGaGCCC- -5'
29442 5' -57.1 NC_006151.1 + 28006 0.66 0.884093
Target:  5'- cACCCCgaccgGGGGAUCCCccgcaUCCgguaccgUCGGGu -3'
miRNA:   3'- cUGGGGaa---UCUCUGGGGa----AGG-------AGCCC- -5'
29442 5' -57.1 NC_006151.1 + 61849 0.66 0.877817
Target:  5'- cGCCCC--GGGGACCCUgaUgCUCGGc -3'
miRNA:   3'- cUGGGGaaUCUCUGGGGa-AgGAGCCc -5'
29442 5' -57.1 NC_006151.1 + 46830 0.66 0.877817
Target:  5'- uGCCCCc--GAGACCgCCgccCCcCGGGg -3'
miRNA:   3'- cUGGGGaauCUCUGG-GGaa-GGaGCCC- -5'
29442 5' -57.1 NC_006151.1 + 32876 0.66 0.877817
Target:  5'- cGACCCgCgcgGGGGGCCCCcUCCUg--- -3'
miRNA:   3'- -CUGGG-Gaa-UCUCUGGGGaAGGAgccc -5'
29442 5' -57.1 NC_006151.1 + 117524 0.66 0.855666
Target:  5'- gGGCCgCUcGGGGGCCCCcUCCcacgCGGc -3'
miRNA:   3'- -CUGGgGAaUCUCUGGGGaAGGa---GCCc -5'
29442 5' -57.1 NC_006151.1 + 138492 0.66 0.851016
Target:  5'- uGCUCCUcGGcGGGCgCCCgcugcaccuccucgUCCUCGGGg -3'
miRNA:   3'- cUGGGGAaUC-UCUG-GGGa-------------AGGAGCCC- -5'
29442 5' -57.1 NC_006151.1 + 48553 0.66 0.847878
Target:  5'- gGGCCCCccgccgaguaAGAGACCCUgcggCCUgccgccCGGGg -3'
miRNA:   3'- -CUGGGGaa--------UCUCUGGGGaa--GGA------GCCC- -5'
29442 5' -57.1 NC_006151.1 + 2181 0.67 0.839899
Target:  5'- cGGCCCCggcgcccGAGGCCCCcgcgggCCggUGGGu -3'
miRNA:   3'- -CUGGGGaau----CUCUGGGGaa----GGa-GCCC- -5'
29442 5' -57.1 NC_006151.1 + 27217 0.67 0.839899
Target:  5'- gGGCCCCgcgcgccgUGGAcGCgCaCC-UCCUCGGGg -3'
miRNA:   3'- -CUGGGGa-------AUCUcUG-G-GGaAGGAGCCC- -5'
29442 5' -57.1 NC_006151.1 + 126126 0.67 0.839899
Target:  5'- aACCCCUUcGGGGCgCUcgCCaUCGGGc -3'
miRNA:   3'- cUGGGGAAuCUCUGgGGaaGG-AGCCC- -5'
29442 5' -57.1 NC_006151.1 + 7599 0.67 0.831734
Target:  5'- aGACCCCU--GAGACCCCcgagacCCUCc-- -3'
miRNA:   3'- -CUGGGGAauCUCUGGGGaa----GGAGccc -5'
29442 5' -57.1 NC_006151.1 + 85448 0.67 0.82925
Target:  5'- cGGCCgCCUUccugggccgcggccAGA-ACCUCUUCCUCGGc -3'
miRNA:   3'- -CUGG-GGAA--------------UCUcUGGGGAAGGAGCCc -5'
29442 5' -57.1 NC_006151.1 + 66065 0.67 0.823392
Target:  5'- gGACCCCgcGGAcGGCCgCCUgggcuUCCacgCGGGc -3'
miRNA:   3'- -CUGGGGaaUCU-CUGG-GGA-----AGGa--GCCC- -5'
29442 5' -57.1 NC_006151.1 + 7568 0.67 0.823392
Target:  5'- aGACCCC---GAGACCCCcguuucccccUCCUCGa- -3'
miRNA:   3'- -CUGGGGaauCUCUGGGGa---------AGGAGCcc -5'
29442 5' -57.1 NC_006151.1 + 136633 0.67 0.793804
Target:  5'- gGACCCCgcggcgcccguGGGGCgCUCgccCCUCGGGg -3'
miRNA:   3'- -CUGGGGaau--------CUCUG-GGGaa-GGAGCCC- -5'
29442 5' -57.1 NC_006151.1 + 127711 0.68 0.779289
Target:  5'- cGAgCUCgUGGAGGCCCCggcgUCCccgucgCGGGc -3'
miRNA:   3'- -CUgGGGaAUCUCUGGGGa---AGGa-----GCCC- -5'
29442 5' -57.1 NC_006151.1 + 77738 0.68 0.77837
Target:  5'- aGCUCCUggccGAGcccgccaucgugcACCCC-UCCUCGGGc -3'
miRNA:   3'- cUGGGGAau--CUC-------------UGGGGaAGGAGCCC- -5'
29442 5' -57.1 NC_006151.1 + 12998 0.68 0.751211
Target:  5'- cACCCgUcccgGGGGAuUCCCUgucCCUCGGGg -3'
miRNA:   3'- cUGGGgAa---UCUCU-GGGGAa--GGAGCCC- -5'
29442 5' -57.1 NC_006151.1 + 124024 0.69 0.741635
Target:  5'- cGGCCCCUcGGAGGCCCC--CgaCGGc -3'
miRNA:   3'- -CUGGGGAaUCUCUGGGGaaGgaGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.