miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29444 3' -56 NC_006151.1 + 103496 0.66 0.884542
Target:  5'- cGCCugGUGGCgc-GCUaCCGcGAGCUg -3'
miRNA:   3'- -CGGugCAUCGacuCGA-GGCcCUUGAa -5'
29444 3' -56 NC_006151.1 + 141451 0.66 0.884542
Target:  5'- cCC-CGUAGgaGGGCggucuggagCCGGGGGCg- -3'
miRNA:   3'- cGGuGCAUCgaCUCGa--------GGCCCUUGaa -5'
29444 3' -56 NC_006151.1 + 47697 0.66 0.884542
Target:  5'- cGCCAUuUGGCcggUGcGGCgucCCGGGAACUg -3'
miRNA:   3'- -CGGUGcAUCG---AC-UCGa--GGCCCUUGAa -5'
29444 3' -56 NC_006151.1 + 103702 0.66 0.877389
Target:  5'- cGCCGcCGUggagcacccggAGCUGGGCUuCCuGGAGCc- -3'
miRNA:   3'- -CGGU-GCA-----------UCGACUCGA-GGcCCUUGaa -5'
29444 3' -56 NC_006151.1 + 5240 0.66 0.877389
Target:  5'- cGCCGCGcGGCggcggcggGGGC-CCGGGGGg-- -3'
miRNA:   3'- -CGGUGCaUCGa-------CUCGaGGCCCUUgaa -5'
29444 3' -56 NC_006151.1 + 107724 0.66 0.877389
Target:  5'- cGCCGCGgcccccaAGCaGcAGCcCCGGGAGCc- -3'
miRNA:   3'- -CGGUGCa------UCGaC-UCGaGGCCCUUGaa -5'
29444 3' -56 NC_006151.1 + 120252 0.66 0.870012
Target:  5'- gGCgCGCGUgAGCUucgagGuGCUgCGGGAGCUg -3'
miRNA:   3'- -CG-GUGCA-UCGA-----CuCGAgGCCCUUGAa -5'
29444 3' -56 NC_006151.1 + 82160 0.66 0.870012
Target:  5'- uCCAgGUccgAGCcGAGCgCCGGGGGCg- -3'
miRNA:   3'- cGGUgCA---UCGaCUCGaGGCCCUUGaa -5'
29444 3' -56 NC_006151.1 + 91126 0.66 0.869262
Target:  5'- cGCCACGgcGGC-GAGCUuggccacCUGGGGGCg- -3'
miRNA:   3'- -CGGUGCa-UCGaCUCGA-------GGCCCUUGaa -5'
29444 3' -56 NC_006151.1 + 38303 0.66 0.854603
Target:  5'- cGCCGCGcGGCccGGGC-CCGcGGAGCc- -3'
miRNA:   3'- -CGGUGCaUCGa-CUCGaGGC-CCUUGaa -5'
29444 3' -56 NC_006151.1 + 118737 0.67 0.846584
Target:  5'- gGCUACGU-GCUGGGC-CCGGcGGCc- -3'
miRNA:   3'- -CGGUGCAuCGACUCGaGGCCcUUGaa -5'
29444 3' -56 NC_006151.1 + 64740 0.67 0.829953
Target:  5'- gGCCACG-AGCUcGAGCagCGGGGcCa- -3'
miRNA:   3'- -CGGUGCaUCGA-CUCGagGCCCUuGaa -5'
29444 3' -56 NC_006151.1 + 22557 0.67 0.822223
Target:  5'- gGCCACGUGGCgguagccgucguuccGGGC-CCGGGccCUg -3'
miRNA:   3'- -CGGUGCAUCGa--------------CUCGaGGCCCuuGAa -5'
29444 3' -56 NC_006151.1 + 116409 0.68 0.803637
Target:  5'- gGCCACGgcGUUGAGCUuguagcUCGGcAGCUUc -3'
miRNA:   3'- -CGGUGCauCGACUCGA------GGCCcUUGAA- -5'
29444 3' -56 NC_006151.1 + 66792 0.68 0.794533
Target:  5'- gGCgGCGgcGGCgGGGC-CCGGGGACg- -3'
miRNA:   3'- -CGgUGCa-UCGaCUCGaGGCCCUUGaa -5'
29444 3' -56 NC_006151.1 + 101589 0.68 0.775882
Target:  5'- cGCCGCc-AGC-GAGCUCCGGuGGGCc- -3'
miRNA:   3'- -CGGUGcaUCGaCUCGAGGCC-CUUGaa -5'
29444 3' -56 NC_006151.1 + 106675 0.68 0.766353
Target:  5'- gGCCGCGgcGCUcGGCgcgCCGGGcGCc- -3'
miRNA:   3'- -CGGUGCauCGAcUCGa--GGCCCuUGaa -5'
29444 3' -56 NC_006151.1 + 9041 0.68 0.766353
Target:  5'- cGCCGgGgcGCcccgcGuGCUCCGGGGGCg- -3'
miRNA:   3'- -CGGUgCauCGa----CuCGAGGCCCUUGaa -5'
29444 3' -56 NC_006151.1 + 73706 0.68 0.766353
Target:  5'- cGCCGCGU-GCUGGGC-CaCGGGcuGGCg- -3'
miRNA:   3'- -CGGUGCAuCGACUCGaG-GCCC--UUGaa -5'
29444 3' -56 NC_006151.1 + 134414 0.68 0.756702
Target:  5'- cCCGCGcgAGCUGGuGCUgccccCCGGGGGCg- -3'
miRNA:   3'- cGGUGCa-UCGACU-CGA-----GGCCCUUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.